Locus 5042

Sequence ID 2L_DroMel_CAF1
Location 14,462,371 – 14,462,469
Length 98
Max. P 0.839689
window8014

overview

Window 4

Location 14,462,371 – 14,462,469
Length 98
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 76.89
Mean single sequence MFE -11.90
Consensus MFE 0.00
Energy contribution 0.00
Covariance contribution 0.00
Combinations/Pair nan
Mean z-score -1.74
Structure conservation index -0.00
SVM decision value 0.75
SVM RNA-class probability 0.839689
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14462371 98 + 22407834
AAUUUAAUGGGUACAAUCAA-AGUGAAAAAGGAAGAAAACAGCGCU-----UCCAAUGCAAAUGCCCAUAAAAUUAUACAAUUACAAAAUAGUAAAACAAAAUU
(((((.(((((((...((..-...))....(((((.........))-----)))........))))))).)))))......((((......))))......... ( -17.10)
>DroPse_CAF1 71344 94 + 1
AAUUUAAAAGACAAAAACCAAAGAGGAAA----------CAAUGGGUGGAGAGAAAUGCAAAUUCCCAUCAAAUUAUACAAUUACAAAAUAUUAAAACAAAAUU
..(((((.................(....----------)....(((((.(((.........)))))))).....................)))))........ (  -8.20)
>DroSec_CAF1 52504 97 + 1
AAUUUAAUGGGUACAAUCAAAAGUGGAAAAA--GGAAAACAGCGCU-----UCCAAUGCAAAUGCCCAUAAAAUUAUACAAUUACAAAAUAUUAAAACAAAAUU
(((((.(((((((....((....(((((...--(........)..)-----)))).))....))))))).)))))............................. ( -13.70)
>DroEre_CAF1 56399 96 + 1
AAUUUAAGGGGUACAAUCAA-AAUGGUAGAA--GGAAAGGAGCGCU-----UUCAAUGCAAAUGCCCAUAAAAUUAUACAAUUACAAAAUAUUAAAACAAAGUU
(((((...(((((((.....-..))(((...--.(((((.....))-----)))..)))...)))))...)))))............................. ( -12.30)
>DroPer_CAF1 57228 94 + 1
AAUUUAAAAGACAAAAACCAAAGAGGAAA----------CAAUGGGUGGAGAGAAAUGCAAAUUCCCAUCAAAUUAUACAAUUACAAAAUAUUAAAACAAAAUU
..(((((.................(....----------)....(((((.(((.........)))))))).....................)))))........ (  -8.20)
>consensus
AAUUUAAAGGGUACAAUCAAAAGUGGAAAA____GAAA_CAGCGCU_____UCCAAUGCAAAUGCCCAUAAAAUUAUACAAUUACAAAAUAUUAAAACAAAAUU
........................................................................................................ (  0.00 =   0.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:20 2006