| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,457,795 – 14,457,893 |
| Length | 98 |
| Max. P | 0.528733 |
| Location | 14,457,795 – 14,457,893 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 84.09 |
| Mean single sequence MFE | -20.62 |
| Consensus MFE | -16.71 |
| Energy contribution | -17.04 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.81 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528733 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14457795 98 + 22407834 CAAUAACGAGACAUGUCAAAAAGCCAUCAUAAACAGAUGACAUUUCCCAUAUUGAGUGGCGAAAGUAAAAUUUAAUAAUACUACGC-------CAUCGACGAC--------------GG .............((((.....(.((((.......)))).)..........((((.(((((..((((...........)))).)))-------)))))).)))--------------). ( -16.70) >DroVir_CAF1 70493 119 + 1 CAAUAACGAGAGAUGUCAAAAAGCCAUCAUAAACAGAUGACAUUUCCCAUAUUGAGUGGCGAAAGUAAAAUUUAAUAAUAAUACGGAAUACACCGACGGCGACAGCAACAGCGACAGCG ......((.(((((((((...................)))))))))...((((((((.((....))...))))))))......(((......))).))((....((....))....)). ( -24.81) >DroPse_CAF1 64783 106 + 1 CAAUAACGAGAGAUGUCAAAAAGCCAUCAUAAACAGAUGACAUUUCCCAUAUUGAGUGGCGAAAGUAAAAUUUAAUAAUAAUACGA-------CAACGACAGCAGCGGCA------UCG ...........((((((.....(.((((.......)))).)........((((((((.((....))...)))))))).........-------.............))))------)). ( -20.00) >DroMoj_CAF1 104257 113 + 1 CAAUAACGAGAGAUGUCAAAAAGCCAUCAUAAACAGAUGACAUUUCCCAUAUUGAGUGGCGAAAGUAAAAUUUAAUAAUAAUACAGAAUACACCGACGGCGACGGC------GACAGCG ......((.(((((((((...................)))))))))...((((((((.((....))...))))))))................)).((....))((------....)). ( -21.71) >DroAna_CAF1 39963 97 + 1 CAAUAACGAGACAUGUCAAAAAGCCAUCAUAAACAGAUGACAUUUCCCAUAUUGAGUGGCGAAAGUAAAAUUUAAUAAUAAUACGA-------CAUCGGCGAC--------------G- ......((...((((((.....(.((((.......)))).)........((((((((.((....))...)))))))).......))-------))).).))..--------------.- ( -18.10) >DroPer_CAF1 51483 112 + 1 CAAUAACGAGAGAUGUCAAAAAGCCAUCAUAAACAGAUGACAUUUCCCAUAUUGAGUGGCGAAAGUAAAAUUUAAUAAUAAUACGA-------CAACGACAGCAGCGGCAUCGACAUCG ...........((((((.....(((.((((......)))).........((((((((.((....))...)))))))).........-------.............)))...)))))). ( -22.40) >consensus CAAUAACGAGAGAUGUCAAAAAGCCAUCAUAAACAGAUGACAUUUCCCAUAUUGAGUGGCGAAAGUAAAAUUUAAUAAUAAUACGA_______CAACGACGACAGC___________CG ......((.(((((((((...................)))))))))...((((((((.((....))...))))))))...................))..................... (-16.71 = -17.04 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:17 2006