Locus 5038

Sequence ID 2L_DroMel_CAF1
Location 14,448,749 – 14,448,854
Length 105
Max. P 0.627640
window8008

overview

Window 8

Location 14,448,749 – 14,448,854
Length 105
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 82.74
Mean single sequence MFE -34.02
Consensus MFE -23.57
Energy contribution -23.27
Covariance contribution -0.30
Combinations/Pair 1.22
Mean z-score -1.82
Structure conservation index 0.69
SVM decision value 0.19
SVM RNA-class probability 0.627640
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14448749 105 - 22407834
-----------AUCAGUCUUGUCGGUACGAGAUCUCUCGAUCACAUCG-AAAGUACUUGGAA--UUGUGGGAACGAGUGGGCAAAGAGGCUGUUUACGAUCAGUUUCGCACCCACUUGA
-----------.....((((((....))))))((((.((((..((.(.-...)....))..)--))).)))).((((((((....(((((((........)))))))...)))))))). ( -36.00)
>DroSec_CAF1 38931 105 - 1
-----------AUCAGUCUUGUCGGUACGAGAUCUCUCGAUCACAUCG-AAAGUACUUGGAA--UUGUGGGAACGAGUGGGCAAAGAGGCUGUUUACGAUCAGUUUCGCACCCACUUGA
-----------.....((((((....))))))((((.((((..((.(.-...)....))..)--))).)))).((((((((....(((((((........)))))))...)))))))). ( -36.00)
>DroSim_CAF1 41445 105 - 1
-----------AUCAGUCUUGUCGGUACGAGAUCUCUCGAUCACAUCG-AAAGUACUUGGAA--UUGUGGGAACGAGUGGGCAAAGAGGCUGUUUACGAUCAGUUUCGCACCCACUUGA
-----------.....((((((....))))))((((.((((..((.(.-...)....))..)--))).)))).((((((((....(((((((........)))))))...)))))))). ( -36.00)
>DroEre_CAF1 42246 98 - 1
-----------AUCAGUCUA--------GAGAUCUCUCGAUCACAUCGGAAAGUACUUGGAA--UUGUGGGAACGAGUGGGCAAAGAGGCUGUUUACGAUCAGUUUCGCACCCACUUGA
-----------.....(((.--------(((....)))...((((((.((......)).)).--.))))))).((((((((....(((((((........)))))))...)))))))). ( -29.50)
>DroYak_CAF1 42456 105 - 1
-----------AUCAGUCUUGUCGGUACGAGAUCUCUCGAUCACAUCG-AAAGUACUUGGAA--UUGUGGGAACGAGUGGGCAAAGAGGCUGUUUACGAUCAGUUUCGCACCCACUUGA
-----------.....((((((....))))))((((.((((..((.(.-...)....))..)--))).)))).((((((((....(((((((........)))))))...)))))))). ( -36.00)
>DroPer_CAF1 38760 109 - 1
GAUCGGAUCAGAUCAGUCUCUUUGCCUCG---CCUGUUGG------CC-UGAGUACUUGGAAAGUGUUGGGAAUGGGUGGGAACGACGACUGUUUACGAUCAAUUUCGCGCCUACUUGA
(((((....(((.(((((((.((.((.((---(((((...------((-..(.((((.....)))))..)).))))))))))).)).)))))))).))))).................. ( -30.60)
>consensus
___________AUCAGUCUUGUCGGUACGAGAUCUCUCGAUCACAUCG_AAAGUACUUGGAA__UUGUGGGAACGAGUGGGCAAAGAGGCUGUUUACGAUCAGUUUCGCACCCACUUGA
............((((((((..........((((....))))........))).)).))).............((((((((....(((((((........)))))))...)))))))). (-23.57 = -23.27 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:15 2006