Locus 5037

Sequence ID 2L_DroMel_CAF1
Location 14,440,449 – 14,440,539
Length 90
Max. P 0.712930
window8007

overview

Window 7

Location 14,440,449 – 14,440,539
Length 90
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 93.21
Mean single sequence MFE -23.50
Consensus MFE -20.57
Energy contribution -20.73
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.88
SVM decision value 0.38
SVM RNA-class probability 0.712930
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14440449 90 - 22407834
ACCCACAAG--------UCGGAGCUGCUUAUUUAGUAGUUACCACUUCCUGUCGCCUGGCAUCCUUGUCAC--UGCCGCUUCGGGUUAACCUCAAUGCCC
((((..(((--------(.(((((((((.....))))))).))))))...((.((.(((((....))))).--.)).))...)))).............. ( -23.80)
>DroSec_CAF1 30633 90 - 1
ACCCACAAG--------UCGGAGCUGCUUAUUUAGUAGUUACCACUUCCUGUCGCCUGGCAUCCUUGUCAC--UGCCGCUUCGGGUUAACCUCAAUGCCC
((((..(((--------(.(((((((((.....))))))).))))))...((.((.(((((....))))).--.)).))...)))).............. ( -23.80)
>DroSim_CAF1 33114 90 - 1
ACCCACAAG--------UCGGAGCUGCUUAUUUAGUAGUUACCACUUCCUGUCGCCUGGCAUCCUUGUCAC--UGCCGCUUCGGGUUAACCUCAAUGCCC
((((..(((--------(.(((((((((.....))))))).))))))...((.((.(((((....))))).--.)).))...)))).............. ( -23.80)
>DroEre_CAF1 33096 92 - 1
ACCCACAAG--------UCGGAGCUGCUUAUUUAGUAGUUACCACUUCCUGUCGCCUGGCAUCCUUGUCACUCUGCCGCUUCGGGUUAACCUCAAUGCCC
((((..(((--------(.(((((((((.....))))))).))))))...((.((.(((((....)))))....)).))...)))).............. ( -22.80)
>DroYak_CAF1 32807 90 - 1
ACCCACAAG--------UCGGAGCUGCUUAUUUAGUAGUUACCACUUCCUGUCGCCUGGCAUCCUUGUCAC--UGCCGCUCCGGGUUAACCUCAAUGCCC
((((..(((--------(.(((((((((.....))))))).))))))...((.((.(((((....))))).--.)).))...)))).............. ( -23.80)
>DroAna_CAF1 23173 98 - 1
ACCCUCUCGGACCCGGCCCGGACCUGCUUAUUUAGUAGUUACCACUUCCUGUCGCCUGGCAUCCUUGUCAC--UGCCGCCUCGGGUUAACCUGUAUGCCC
.........(((((((..(((..(((((.....)))))..................(((((....))))).--..)))..)))))))............. ( -23.00)
>consensus
ACCCACAAG________UCGGAGCUGCUUAUUUAGUAGUUACCACUUCCUGUCGCCUGGCAUCCUUGUCAC__UGCCGCUUCGGGUUAACCUCAAUGCCC
((((...............(((((((((.....))))))).)).......((.((.(((((....)))))....)).))...)))).............. (-20.57 = -20.73 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:13 2006