Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,439,096 – 14,439,189 |
Length | 93 |
Max. P | 0.693953 |
Location | 14,439,096 – 14,439,189 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 78.77 |
Mean single sequence MFE | -22.75 |
Consensus MFE | -15.24 |
Energy contribution | -15.02 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -1.39 |
Structure conservation index | 0.67 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.693953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14439096 93 + 22407834 CUGGCACUGCGGCACU--------CUGUUGCCAACCCAACGCA--ACCCCACCGUUCAGGGGCAGACAUUUUAAUUGCUUGAAAUUGAUGAUAAUUAAGCCGA .((((.((((((((..--------....))))..(((((((..--.......))))..))))))).....((((((......))))))..........)))). ( -24.10) >DroSec_CAF1 29342 88 + 1 CCGGCAUUGCGGCACU--------CUGUUGCCAACCCA-------ACCCCACCGUUCAGGGGCAGACAUUUUAAUUGCUUGAAAUUGAUGAUAAUUAAGCCGA .((((.((((((((..--------....))))......-------..(((........))))))).....((((((......))))))..........)))). ( -22.80) >DroSim_CAF1 31823 88 + 1 CCGGCACUGCGGCACU--------CUGUUGCCAACCCA-------ACCCCACCGUUCAGGGGCAGACAUUUUAAUUGCUUGAAAUUGAUGAUAAUUAAGCCGA .((((.((((((((..--------....))))......-------..(((........))))))).....((((((......))))))..........)))). ( -25.30) >DroEre_CAF1 31701 80 + 1 AUGGCACU----------------CUGUUG-----CCAACGCA--ACCCCACCGUUCAGGGGCAGACAUUUUAAUUGCUUGAAAUUGAUGAUAAUUAAGCCGA .((((..(----------------((((((-----(....)))--)((((........))))))))....((((((......))))))..........)))). ( -19.00) >DroYak_CAF1 31236 101 + 1 CCGGCACUGCGGCACUACGGCAGUCGGAUGGCAACCCAACACA--ACCCCACCGUUCAGGGGCAGACAUUUUAAUUGCUUGAAAUUGAUGAUAAUUAAGCCGA (((..(((((.(.....).)))))))).((((...........--.((((........))))((...(((((((....)))))))...))........)))). ( -24.80) >DroAna_CAF1 22110 74 + 1 -CGGC----------------------UUC-----CCAACGCCCCUCCCCAUAAUU-UGGGGCAGACAUUUUAAUUGCUUCAAAUUGAUGAUAAUUAAGCCGA -((((----------------------((.-----.....(((((...........-.))))).......((((((......))))))........)))))). ( -20.50) >consensus CCGGCACUGCGGCACU________CUGUUGCCAACCCAACGCA__ACCCCACCGUUCAGGGGCAGACAUUUUAAUUGCUUGAAAUUGAUGAUAAUUAAGCCGA .((((.........................................((((........))))........((((((......))))))..........)))). (-15.24 = -15.02 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:13 2006