| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,437,486 – 14,437,585 |
| Length | 99 |
| Max. P | 0.803537 |
| Location | 14,437,486 – 14,437,585 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 90.62 |
| Mean single sequence MFE | -24.94 |
| Consensus MFE | -20.24 |
| Energy contribution | -20.48 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.803537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14437486 99 - 22407834 ACUCGAUCCGAACACCGAGCUCCCCAGACCAGACAUGGCAUUAAUUCUAAGCCGCUGGAAAUCGUUUGCUUCGAAAUCCAGUGGCAUCCUUCCCUUUGA .((((..........)))).....(((((((....)))............(((((((((..(((.......)))..))))))))).........)))). ( -25.50) >DroSec_CAF1 27743 94 - 1 ACUCCAUCCGAACUGCGAGCUCCCCA-----GACAGGGCAUUAAUUCUAAGCCGCUGGAAAUCGUUUGCUUCGAAAUCCAGUGGCAUCCUUCCCUUUGA ........((((......((((....-----....))))...........(((((((((..(((.......)))..))))))))).........)))). ( -24.80) >DroSim_CAF1 30223 94 - 1 ACUCCAUCCGAACUCCGAGCUCCCCA-----GACAGGGCAUUAAUUCUAAGCCGCUGGAAAUCGUUUGCUUCGAAAUCCAGUGGCAUCCUUCCCUUUGA ........((((......((((....-----....))))...........(((((((((..(((.......)))..))))))))).........)))). ( -24.80) >DroEre_CAF1 30159 93 - 1 ACUCCAUCCGAACU-CUAGCUUCCCA-----GACAGGGCCUUAAUUCUAAGCCGCUGAAAAUCGUUUGCCUCGAAAUCCAGUGGCAUCGUUGCCUUUGA ........((((..-.((((..(((.-----....)))............(((((((....(((.......)))....)))))))...))))..)))). ( -19.40) >DroYak_CAF1 29677 93 - 1 ACUGGAUCCGCACU-CUAGCUUCCCA-----GACAGGGCAUUAAUUCUAAGCCGCUGGAAAUCGUUUGCUCCGAAAUCCAGUGGCAUCGUUGCCUUUGA .((((....((...-...))...)))-----)..(((((((((....)))(((((((((..(((.......)))..))))))))).....))))))... ( -30.20) >consensus ACUCCAUCCGAACU_CGAGCUCCCCA_____GACAGGGCAUUAAUUCUAAGCCGCUGGAAAUCGUUUGCUUCGAAAUCCAGUGGCAUCCUUCCCUUUGA ..................((((.............))))...........(((((((((..(((.......)))..))))))))).............. (-20.24 = -20.48 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:10 2006