Locus 5028

Sequence ID 2L_DroMel_CAF1
Location 14,422,254 – 14,422,356
Length 102
Max. P 0.927599
window7985

overview

Window 5

Location 14,422,254 – 14,422,356
Length 102
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 79.97
Mean single sequence MFE -24.34
Consensus MFE -11.49
Energy contribution -12.10
Covariance contribution 0.61
Combinations/Pair 1.17
Mean z-score -3.05
Structure conservation index 0.47
SVM decision value 1.18
SVM RNA-class probability 0.927599
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14422254 102 - 22407834
UAAAAUUCAAUGUUUAUGGG-CAGCCUCUGAUUUUCGGUAUAGUAUAGUAAGUUUGGCUUGAUUUUUUUGUUUUUUUUUUGUUCAAGCUGAACUU--GCUUCGGC
..........((((....))-))(((.(((.....)))....(...((((((((..((((((....................))))))..)))))--))).)))) ( -25.05)
>DroSec_CAF1 12847 89 - 1
UAAAAUUCAAUGUUUAUGGG-CAGCCUCUGAUUUUCGGUAU-----AGUAAGUUUGGCUUGAUUUUAU-------UUUUUG-UCAAGCUGAACUU--GCCUCGGC
..........((((....))-))(((.(((.....)))...-----.(((((((..(((((((.....-------.....)-))))))..)))))--))...))) ( -25.90)
>DroSim_CAF1 14535 89 - 1
UAAAAUUCAAUGUUUAUGGG-CAGCCUCUGAUUUUCGGUAU-----AGUAAGUUUGGCUUGAUUUUAU-------UUUUUG-UCAAGCUGAACUU--GCUUCGGC
..........((((....))-))(((.(((.....)))...-----((((((((..(((((((.....-------.....)-))))))..)))))--)))..))) ( -26.80)
>DroEre_CAF1 14159 84 - 1
UAAAAUUCAAUGUUUAUGGC-CAGCCUCUGAAUUUGGGUUU-----AGUAAGUUUGGCUUGAUUUU--------------U-UCGAGCUGAACUUGUGCUUCGGC
..((((((((.(((((.((.-...))..)))))))))))))-----..((((((..((((((....--------------.-))))))..)))))).((....)) ( -27.30)
>DroYak_CAF1 14249 82 - 1
UAAAAUCCCAAGUUUAUGGG-CAGCCUCUGAUUUUCGGUAU-----AGUAAGUUUGGCUCGAUUUU--------------U-UCAAGCUGAACUU--GCUUCAGC
......((((......))))-......((((..........-----((((((((..(((.((....--------------.-)).)))..)))))--))))))). ( -22.80)
>DroAna_CAF1 5215 84 - 1
UAAAAUUCAAAGUUUAUGGCUCUGCCUCUGAU--UCGGUAU-----AGUAUGCCUGGCUUGUAUUUUU-------UUUUUA--UAAGCC-AACUU--GCUUCG--
.........(((((...(((.(((((......--..)))..-----))...))).((((((((.....-------....))--))))))-)))))--......-- ( -18.20)
>consensus
UAAAAUUCAAUGUUUAUGGG_CAGCCUCUGAUUUUCGGUAU_____AGUAAGUUUGGCUUGAUUUU_U_______UUUUUG_UCAAGCUGAACUU__GCUUCGGC
.......................(((..........)))........(((((((((((((((....................)))))))))))))..))...... (-11.49 = -12.10 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:54 2006