Locus 5027

Sequence ID 2L_DroMel_CAF1
Location 14,421,092 – 14,421,203
Length 111
Max. P 0.818267
window7984

overview

Window 4

Location 14,421,092 – 14,421,203
Length 111
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 91.48
Mean single sequence MFE -39.88
Consensus MFE -30.84
Energy contribution -31.65
Covariance contribution 0.81
Combinations/Pair 1.03
Mean z-score -2.18
Structure conservation index 0.77
SVM decision value 0.67
SVM RNA-class probability 0.818267
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14421092 111 - 22407834
AUA-ACGCCAUUCGGUAUUAGCCAAUUUGCGGCAGUUUAUUGGUGGAAAACGGUUUGGCAUGAUUGGCUGCCGGUUUGCU-UGCUGCCUGCAGUCUGC-----GCUGGCUACUGUUUA
...-........((((((((((((..((((((((((.....((..((...((((..(.((....)).).)))).))..))-.)))))).))))..)).-----))))).))))).... ( -38.50)
>DroSec_CAF1 11668 117 - 1
AUA-ACGCCAUUCGGUAUUAGCCAAUUUGCGGCAGUUUAUUGGUGGAAAACGGUUUGGCAUGAUUGGCUGCCGGUUUGCUUUGCUGGCUGCUGGUUGCCGUCUGCUGGCUACUGUUUA
.((-(..((....))..)))((((((..((....))..))))))...((((((((..(((.(((.(((.((((((..(((.....))).)))))).)))))))))..)..))))))). ( -42.90)
>DroSim_CAF1 13373 117 - 1
AUA-ACGCCAUUCGGUAUUAGCCAAUUUGCGGCAGUUUAUUGGUGGAAAACGGUUUGGCAUGAUUGGCUGCCGGUUUGCUUUGCUGGCUGCUAGUUGCCGUCUGCUGGCUACUGUUUA
.((-(..((....))..)))((((((..((....))..))))))...(((((((..((((..((((((.((((((.......)))))).))))))))))(((....))).))))))). ( -41.40)
>DroYak_CAF1 13019 112 - 1
AUAAACGCCAUUCGGUAUUAGCCAAUUUGCGGCAGUUUAUUGGUGGAAAACGGUUUGGCAUGAUUGGCUGCUGGUU------GCUGUCUGCUGGCUGCUGUCUGCUGGCUACUGUUUA
.((((((((....)))..((((((.(..(((((((((....((..(....((((..(.((....)).).))))...------.)..))....)))))))))..).))))))..))))) ( -36.70)
>consensus
AUA_ACGCCAUUCGGUAUUAGCCAAUUUGCGGCAGUUUAUUGGUGGAAAACGGUUUGGCAUGAUUGGCUGCCGGUUUGCU_UGCUGGCUGCUGGCUGCCGUCUGCUGGCUACUGUUUA
......(((....)))..((((((.....(((((((..((((((.(((.....))).)).))))..))))))).........((.(((.((.....)).))).))))))))....... (-30.84 = -31.65 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:53 2006