| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,409,765 – 14,409,872 |
| Length | 107 |
| Max. P | 0.566326 |
| Location | 14,409,765 – 14,409,872 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 83.35 |
| Mean single sequence MFE | -38.32 |
| Consensus MFE | -26.61 |
| Energy contribution | -28.75 |
| Covariance contribution | 2.14 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566326 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14409765 107 + 22407834 GUUGGGGCACGAGAGCAAACGUUUUUAGUUCUGCGCUCUUUGCUGAGCGCGCAUGCUUUUUGCUGAGGCAGCGAAUUUCGCGUGGGAGCUGAGAGCCAA-AAAGCGUA (((..((((((........)))((((((((((((((((......)))))).(((((..(((((((...)))))))....))))))))))))))))))..-..)))... ( -42.00) >DroSec_CAF1 300 107 + 1 GUUGGGGCACGAGAGCAAACGUUUUUAGUUCUGCGCUCUUUGCUGAGCGCGCAUGCUUUUUGCUGAGGCAGCGAAUUUCGCGUGGGAGCGGAGAGCCAA-AAAGCGCA (((...((......)).)))((((((.(((((.((((((((((.(((..(((.((((((.....)))))))))..))).))).))))))).)))))..)-)))))... ( -40.10) >DroSim_CAF1 1384 107 + 1 GUUGGGGCACGAGAGCAAACGUUUUUAGUUCUGCGCUCUUUGCUGAGCGCGCAUGCUUUUUGCUGAGGCAGCGAAUUUCGCGUGGGAGCGGAGAGCCAA-AAAGCGCA (((...((......)).)))((((((.(((((.((((((((((.(((..(((.((((((.....)))))))))..))).))).))))))).)))))..)-)))))... ( -40.10) >DroEre_CAF1 1593 108 + 1 GUUGGAGCACGAGAGCAAAAGUGUUCAGUUCUGCGCUCUUUGCUGAGCGCGCAUGUUUUUCGCUGAGACAGCGAAUUUCGCGUGGGAGCGGAGAGCCAAAAAAGCGCA .((((..(....(((((....))))).(((((((((((......)))))).(((((..(((((((...)))))))....))))))))))...)..))))......... ( -39.90) >DroYak_CAF1 1627 107 + 1 GUUGGGGCACGAGAGCAAAAGUUUUCAGUUCUGCGCUCUUUGCUGAGCGCGCAUGCUUUUUGCUGAGGCAGCGAAUUUCGCGUGGGAGCGGAGAGCCAA-AAAGCGCA ....(.((..((((((....)))))).(((((.((((((((((.(((..(((.((((((.....)))))))))..))).))).))))))).)))))...-...)).). ( -42.50) >DroMoj_CAF1 32297 86 + 1 GUGAGAGCACAAGCGCAAGCUUUACGGCUCCGACUCUCUUUGCUGAGCGCGCAUGCUUUCUGCUGAGGCAGCA----------------UUAC-A--AA-AAAG--UA ((((((((..((((....))))....))))((.(((........))))).((.((((((.....)))))))).----------------))))-.--..-....--.. ( -25.30) >consensus GUUGGGGCACGAGAGCAAACGUUUUUAGUUCUGCGCUCUUUGCUGAGCGCGCAUGCUUUUUGCUGAGGCAGCGAAUUUCGCGUGGGAGCGGAGAGCCAA_AAAGCGCA ....(.((.(....).....((((((.(((((((((((......)))))).(((((..(((((((...)))))))....)))))))))).)))))).......)).). (-26.61 = -28.75 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:43 2006