Locus 5021

Sequence ID 2L_DroMel_CAF1
Location 14,408,411 – 14,408,506
Length 95
Max. P 0.952514
window7972

overview

Window 2

Location 14,408,411 – 14,408,506
Length 95
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 73.38
Mean single sequence MFE -25.90
Consensus MFE -13.31
Energy contribution -13.46
Covariance contribution 0.14
Combinations/Pair 1.24
Mean z-score -2.09
Structure conservation index 0.51
SVM decision value 1.42
SVM RNA-class probability 0.952514
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14408411 95 + 22407834
AAUGAUGAUUGCUGGAUUGCAGCAUUUUAUUAUAAUUUGUUAAAUCCACUUUGACGGCUUUU-------CUUUGGUG-GUUCGGUGGAGGUGUUGA------GUGGUUG-----------
.(((((((.(((((.....)))))..))))))).((((..((..((((((..(((.(((...-------....))).-))).))))))..))..))------)).....----------- ( -25.10)
>DroGri_CAF1 14014 92 + 1
AGUGAUGAUUGCUGGAUUGCAGCAUUUUGUUAUAGUUUGUUAAAUCCACUUUGACGGCUGUU-------CUUUGGUU-G--AGGCGGAG-----------------GUGUUUGAGUUGA-
.((((..(.(((((.....)))))..)..))))...........((.((((.((((.((.(.-------((((....-)--))).).))-----------------.)))).)))).))- ( -20.90)
>DroSim_CAF1 45 96 + 1
AAUGAUGAUUGCUGGAUUGCAGCAUUUUAUUAUAAUUUGUUAAAUCCACUUUGACGGCUUUU-------CUUUGGUG-GUUCGGUGGAGGUGUUGA------GUGGUUGU----------
.(((((((.(((((.....)))))..))))))).((((..((..((((((..(((.(((...-------....))).-))).))))))..))..))------))......---------- ( -25.10)
>DroEre_CAF1 168 96 + 1
AAUGAUGAUUGCUGGAUUGCAGCAUUUUAUUAUAAUUUGUUAAAUCCACUUUGACGGCUUUU-------CUUUGGUG-GUUUGGUGGAGGUGUUGA------GUGGUUGU----------
.(((((((.(((((.....)))))..))))))).((((..((..((((((..(((.(((...-------....))).-))).))))))..))..))------))......---------- ( -26.10)
>DroWil_CAF1 81633 111 + 1
AAUGAUGAUUGCUGGAUUGCAGCAUUUUAUUAUAAUUUGUUAAAUCCACUUUGACGGCUUUUUUUGUAUCUUUGGUU-GAU--AUGGAGGAGCUGU------GUGUUGUAUGUAGGUGUU
.(((((((.(((((.....)))))..))))))).............(((((..(((((((((.(..((((.......-)))--)..))))))))))------...........))))).. ( -26.02)
>DroMoj_CAF1 30854 108 + 1
AGUGAUGAUUGCUGGACUGCAGCAUUUUGUUGUAGUUGGUUAAAUCCACUUUGAAGGCUGUU-------CUUUGGCUUG--AGUGUGGGAAG--AAGAAGCUGCAGCACUUUAGGUUAG-
((((..((((..(.(((((((((.....))))))))).)...))))))))((((((((((((-------((((..(((.--.....)))..)--))))....))))).)))))).....- ( -32.20)
>consensus
AAUGAUGAUUGCUGGAUUGCAGCAUUUUAUUAUAAUUUGUUAAAUCCACUUUGACGGCUUUU_______CUUUGGUG_GUUAGGUGGAGGUGUUGA______GUGGUUGU__________
.(((((((.(((((.....)))))..)))))))...........((((((......(((..............)))......))))))................................ (-13.31 = -13.46 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:42 2006