| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,498,810 – 1,498,910 |
| Length | 100 |
| Max. P | 0.985284 |
| Location | 1,498,810 – 1,498,910 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 74.60 |
| Mean single sequence MFE | -39.45 |
| Consensus MFE | -23.75 |
| Energy contribution | -23.78 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.60 |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.985284 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1498810 100 + 22407834 ACUUGUUGCUGAAACUCCAGAUUCUUGUAGAUCAUGGCUGCAGCAGCAGCAGCAUUGUUAGGAGCCUGAGGUUGUUGCGGGGCAGCCUGUUGCGAGUGUU------------- ((((((.((..........((((......))))..((((((....((((((((....((((....)))).))))))))...)))))).)).))))))...------------- ( -36.20) >DroSec_CAF1 116496 94 + 1 ACUUGCUGCUGAAACUCCAGGUUCUUGUAGAUCAUGGCUGCAGCUGCAGCAGCACUGUUAGUAUUCU------GCUGCGGGGCAGCCUGUUGCGAGUGUU------------- ((((((.((..........((((......))))..((((((..(((((((((.((.....))...))------))))))).)))))).)).))))))...------------- ( -37.80) >DroSim_CAF1 119032 94 + 1 ACUUGCUGCUGAAACUCCAGGUUCUUGUAGAUCAUGGCUGCAGCUGCAGCAGCACUGUUAGUAUUCU------GCUGCGGGGCAGCCUGUUGCGAGUGUU------------- ((((((.((..........((((......))))..((((((..(((((((((.((.....))...))------))))))).)))))).)).))))))...------------- ( -37.80) >DroEre_CAF1 122665 100 + 1 ACUUGCUGCUGAAACUCCAGGUUCUUGUAGAUCAUGGCUGCUGGAGCAGCAGCACCACCAGGGGCCUGAUGCUGCUGCGGGGCAGCCUGCUGCGAGUGCU------------- ........(((......)))((.(((((((.....(((((((...(((((((((....(((....))).)))))))))..)))))))..))))))).)).------------- ( -45.60) >DroYak_CAF1 119734 113 + 1 ACUUGCUGCUGAAACUCCAGGUUCUUGUAGAUCAUGGCUGCUGCAGCAGCAGCGCUAUUAGGAGCCUGAUGCUGCUGCGGGGCAGCCUGUUGCGCGUGUUGCUGUUGCGCGUG .....((((...(((.....)))...)))).....(((((((.(.((((((((...(((((....)))))))))))))).)))))))....(((((((.......))))))). ( -47.60) >DroAna_CAF1 143293 85 + 1 AUCUGCUGCUGGAGCUCCAGAUUGGCAUAGAUCAUGGCAGCGGCCGCCGCAUUCGAGUUGGUUUGCU------GCUGU---------UGCUGCUGGUGUU------------- ...((((.((((....))))...))))........(((((((((.((.(((..(......)..))).------)).))---------)))))))......------------- ( -31.70) >consensus ACUUGCUGCUGAAACUCCAGGUUCUUGUAGAUCAUGGCUGCAGCAGCAGCAGCACUGUUAGGAGCCU______GCUGCGGGGCAGCCUGUUGCGAGUGUU_____________ ((((((.((..........((((......))))..((((((.......(((((......((....))......)))))...)))))).)).))))))................ (-23.75 = -23.78 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:43 2006