Locus 5016

Sequence ID 2L_DroMel_CAF1
Location 14,400,443 – 14,400,538
Length 95
Max. P 0.972993
window7963

overview

Window 3

Location 14,400,443 – 14,400,538
Length 95
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.37
Mean single sequence MFE -19.36
Consensus MFE -17.57
Energy contribution -17.91
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.60
Structure conservation index 0.91
SVM decision value 1.70
SVM RNA-class probability 0.972993
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14400443 95 + 22407834
UAAGAAAAAUCUUUAAGCUGACAGCUGACUAAAUUAAUUUGACAAUAAUUAGCAUUUCAAGUUGUCAGCGUUAAUGAA-AUUUUCACCCCU------------CC------------ACC
...(((((.((.((((((((((((((.......((((((.......)))))).......)))))))))).)))).)).-.)))))......------------..------------... ( -21.84)
>DroPse_CAF1 33163 84 + 1
UAUGAAAAAUCUUUAAGCUGACAGCUGACUAAAUUAAUUUGACAAUAAUUAGCAUUCCAAGUUGUCAACGUUAAUGAA-AUUUCU-----------------------------------
...((((..((.(((((.((((((((.......((((((.......)))))).......)))))))).).)))).)).-.)))).----------------------------------- ( -14.74)
>DroSec_CAF1 21634 94 + 1
UAAGAAAAAUCUUUAAGCUGACAGCUGACUAAAUUAAUUUGACAAUAAUUAGCAUUUCAAGUUGUCAGCGUUAAUGA--AUUUCCACCCCU------------UC------------ACC
...((((..((.((((((((((((((.......((((((.......)))))).......)))))))))).)))).))--.)))).......------------..------------... ( -20.04)
>DroEre_CAF1 21556 108 + 1
UAAGAAAAAUCUUUAAGCUGACAGCUGACUAAAUUAAUUUGACAAUAAUUAGCAUUUCAAGUUGUCAGCGUUAAUGAAAAUUUCCACACCUCCCGCCCUCCCUCC------------AAC
...((((..((.((((((((((((((.......((((((.......)))))).......)))))))))).)))).))...)))).....................------------... ( -20.24)
>DroYak_CAF1 21537 97 + 1
UAAGAAAAAUCUUUAAGCUGACAGCUGACUAAAUUAAUUUGACAAUAAUUAGCAUUUCAAGUUGUCAGCGUUAAUGAA-AUUUCCACCCCUCCC----------C------------GCC
...((((..((.((((((((((((((.......((((((.......)))))).......)))))))))).)))).)).-.))))..........----------.------------... ( -21.14)
>DroAna_CAF1 35863 111 + 1
UAAGAAGAAUCUUUAAGCUGACAGCCGACUAAAUUAAUUUGACAAUAAUUAGCAUUUCAAGUUGUCAGCGUUAAUGAA-AUC---GCCCCU-----CUACCCCCCAAGCAUCUCCUGCCC
..((.(((.((.(((((((((((((........((((((.......))))))........))))))))).)))).)).-...---((....-----...........)).))).)).... ( -18.15)
>consensus
UAAGAAAAAUCUUUAAGCUGACAGCUGACUAAAUUAAUUUGACAAUAAUUAGCAUUUCAAGUUGUCAGCGUUAAUGAA_AUUUCCACCCCU____________CC____________ACC
.........((.((((((((((((((.......((((((.......)))))).......)))))))))).)))).))........................................... (-17.57 = -17.91 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:33 2006