| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,399,819 – 14,399,910 |
| Length | 91 |
| Max. P | 0.929238 |
| Location | 14,399,819 – 14,399,910 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 84.62 |
| Mean single sequence MFE | -15.73 |
| Consensus MFE | -11.51 |
| Energy contribution | -12.45 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929238 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14399819 91 - 22407834 AAUACAUUCAUAUAUUUGUAGAUUUUAUGAUACUUUACUCACCUAGUUUCGAAUAAGUCUUAAUAAAGUGCUGUUAUUAAUAGCACUACAA ............((((...((((((..(((.(((..........))).)))...)))))).)))).((((((((.....)))))))).... ( -16.00) >DroSec_CAF1 21025 91 - 1 AAUACGUUCAUAUAUUUGUAGACUUUAUGAUACUUUACUCACCCAGUUUCGAAUAAAUCUUAAUAAAGUGCUGUUAUUAAUAGCACUACAA ............((((((.(((((...(((........)))...)))))))))))...........((((((((.....)))))))).... ( -16.70) >DroSim_CAF1 19906 91 - 1 AAUACGUUCAUAUACUUGUAGAUUUUAUGAUACUUUACUCACCCAGUUUCGAAUAAAUCUUAAUAAAGUGCUGUUAUUAAUAGCACUACAA ................(((((((((..(((.(((..........))).)))...))))))......((((((((.....))))))))))). ( -14.50) >DroEre_CAF1 20984 81 - 1 -------UCAUAUAUUGCCACAAUUUAUGGUACCUCGCUCAGCGAAUUUUAAAUAAAUCUUAAUAAAGUGCUGUUAUUAAUAGCACUA--- -------........(((((.......)))))..((((...)))).....................((((((((.....)))))))).--- ( -15.70) >consensus AAUACGUUCAUAUAUUUGUAGAUUUUAUGAUACUUUACUCACCCAGUUUCGAAUAAAUCUUAAUAAAGUGCUGUUAUUAAUAGCACUACAA ............((((((.(((((...(((........)))...)))))))))))...........((((((((.....)))))))).... (-11.51 = -12.45 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:31 2006