Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,398,078 – 14,398,174 |
Length | 96 |
Max. P | 0.994190 |
Location | 14,398,078 – 14,398,174 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -22.93 |
Consensus MFE | -19.42 |
Energy contribution | -19.62 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -1.57 |
Structure conservation index | 0.85 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505384 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14398078 96 + 22407834 AACCCUGUCACAUUAACUGUCAACUGCCGCACAACUGACACUUGUCAUAUUGACAACCGACAGCGUCAUUUGACUGUCAAACGCGGGCCAACAGAG ..(((((((........(((((..((.....))..))))).(((((.....)))))..))))((((...(((.....))))))))))......... ( -22.00) >DroSec_CAF1 19286 96 + 1 AACCCUGUCACAUUAACUGUCAACUGCCGCACAACUGACACUUGUCAUAUUGACAACCGACAGCGUCAUUUGACUGUCAAACGCGGGCCAACAGAG ..(((((((........(((((..((.....))..))))).(((((.....)))))..))))((((...(((.....))))))))))......... ( -22.00) >DroSim_CAF1 18167 96 + 1 AACCCUGUCACAUUAACUGUCAACUGCCGCACAACUGACACUUGUCAUAUUGACAACCGACAGCGUCAUUUGACUGUCAAACGCGGGCCAACAGAG ..(((((((........(((((..((.....))..))))).(((((.....)))))..))))((((...(((.....))))))))))......... ( -22.00) >DroEre_CAF1 19279 96 + 1 AACCCUGUCACAUUAACUGUCAACUGCCGCACAACUGACACUUGUCAUAUUGACAACCGACAGCGUCAUUUGACUGUCAAACGCGGGCCAACAGAG ..(((((((........(((((..((.....))..))))).(((((.....)))))..))))((((...(((.....))))))))))......... ( -22.00) >DroYak_CAF1 19147 96 + 1 AACCCUGUCACAUUAACUGUCAACUGCCGCACAACUGACACUUGUCAUAUUGACAACCGACAGCGUCAUUUGACUGUCAAACGCGGGCCAACAGAG ..(((((((........(((((..((.....))..))))).(((((.....)))))..))))((((...(((.....))))))))))......... ( -22.00) >DroAna_CAF1 33674 96 + 1 AACGCUGUCACAUUAACUGUCAACUACUGCAGAACUGACACUUGUCAUAUUGACAAGUGACAGCGUCAUUUGACUGUCAAACCCGGGCCAAGAGAG ..(((((((((.....((((........)))).........(((((.....))))))))))))))((.((((.(((.......)))..)))).)). ( -27.60) >consensus AACCCUGUCACAUUAACUGUCAACUGCCGCACAACUGACACUUGUCAUAUUGACAACCGACAGCGUCAUUUGACUGUCAAACGCGGGCCAACAGAG ................((((......((((...........(((((.....)))))..(((((((.....)).)))))....))))....)))).. (-19.42 = -19.62 + 0.19)
Location | 14,398,078 – 14,398,174 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -32.17 |
Consensus MFE | -29.62 |
Energy contribution | -29.57 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.10 |
Mean z-score | -1.96 |
Structure conservation index | 0.92 |
SVM decision value | 2.46 |
SVM RNA-class probability | 0.994190 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14398078 96 - 22407834 CUCUGUUGGCCCGCGUUUGACAGUCAAAUGACGCUGUCGGUUGUCAAUAUGACAAGUGUCAGUUGUGCGGCAGUUGACAGUUAAUGUGACAGGGUU (((((((.(((((((.......(((....)))((((.((.(((((.....))))).)).)))))))).))).....(((.....)))))))))).. ( -32.60) >DroSec_CAF1 19286 96 - 1 CUCUGUUGGCCCGCGUUUGACAGUCAAAUGACGCUGUCGGUUGUCAAUAUGACAAGUGUCAGUUGUGCGGCAGUUGACAGUUAAUGUGACAGGGUU (((((((.(((((((.......(((....)))((((.((.(((((.....))))).)).)))))))).))).....(((.....)))))))))).. ( -32.60) >DroSim_CAF1 18167 96 - 1 CUCUGUUGGCCCGCGUUUGACAGUCAAAUGACGCUGUCGGUUGUCAAUAUGACAAGUGUCAGUUGUGCGGCAGUUGACAGUUAAUGUGACAGGGUU (((((((.(((((((.......(((....)))((((.((.(((((.....))))).)).)))))))).))).....(((.....)))))))))).. ( -32.60) >DroEre_CAF1 19279 96 - 1 CUCUGUUGGCCCGCGUUUGACAGUCAAAUGACGCUGUCGGUUGUCAAUAUGACAAGUGUCAGUUGUGCGGCAGUUGACAGUUAAUGUGACAGGGUU (((((((.(((((((.......(((....)))((((.((.(((((.....))))).)).)))))))).))).....(((.....)))))))))).. ( -32.60) >DroYak_CAF1 19147 96 - 1 CUCUGUUGGCCCGCGUUUGACAGUCAAAUGACGCUGUCGGUUGUCAAUAUGACAAGUGUCAGUUGUGCGGCAGUUGACAGUUAAUGUGACAGGGUU (((((((.(((((((.......(((....)))((((.((.(((((.....))))).)).)))))))).))).....(((.....)))))))))).. ( -32.60) >DroAna_CAF1 33674 96 - 1 CUCUCUUGGCCCGGGUUUGACAGUCAAAUGACGCUGUCACUUGUCAAUAUGACAAGUGUCAGUUCUGCAGUAGUUGACAGUUAAUGUGACAGCGUU .....(((((...(......).)))))..(((((((((((((((((((.((((....))))(.....)....)))))))).....))))))))))) ( -30.00) >consensus CUCUGUUGGCCCGCGUUUGACAGUCAAAUGACGCUGUCGGUUGUCAAUAUGACAAGUGUCAGUUGUGCGGCAGUUGACAGUUAAUGUGACAGGGUU (((((((.(((((((.......(((....)))((((.((.(((((.....))))).)).)))))))).))).....(((.....)))))))))).. (-29.62 = -29.57 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:30 2006