Locus 5012

Sequence ID 2L_DroMel_CAF1
Location 14,395,748 – 14,395,850
Length 102
Max. P 0.529395
window7958

overview

Window 8

Location 14,395,748 – 14,395,850
Length 102
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 88.71
Mean single sequence MFE -18.12
Consensus MFE -16.16
Energy contribution -16.36
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.27
Structure conservation index 0.89
SVM decision value -0.01
SVM RNA-class probability 0.529395
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14395748 102 + 22407834
CAACCACCCGAGUAUGGCAAUAAAAA-------------AAAAACAAGUGACUACGACAA---CAACAGUAGUCAUGGCUGAGCAAGUUGGAAAUGAAACCUCAACUGAAAUGCAUUU-
((.((..((......)).........-------------........((((((((.....---.....)))))))))).)).(((((((((..........))))))....)))....- ( -17.70)
>DroSec_CAF1 16788 100 + 1
CAACAAGCCGAGUAUGGCAAUAAA----------------AAAACAAGUGACUACGACAA---CAACAGUAGUCAUGGCUGAGCAAGUUGGAAAUGAAACCUCAACUGAAAUGCAUUUA
.....((((...(((....)))..----------------.......((((((((.....---.....))))))))))))..(((((((((..........))))))....)))..... ( -20.60)
>DroSim_CAF1 15795 99 + 1
CAACAUGCCGAGUAUGGCAAUAAA----------------AAAACAAGUGACUACGACAA---CAACAGUAGUCAUGGCUGAGCAAGUUGGAAAUGAAACCUCAACUGAAAUGCAUUU-
.....((((......)))).....----------------.......((((((((.....---.....)))))))).((......((((((..........)))))).....))....- ( -20.90)
>DroEre_CAF1 16915 118 + 1
CAACAACCUGAGUAUGGCAAUAAAAAACAAAAAAAAUAAAAAAACAAGUGAGUACGACAACAACAACAGUAGUCAUGGCUGAGCAAGUUGGAAAUGAAACCUCAACUGAAAUGCAUUU-
...........((((..(.............................((((.(((.............))).))))((.((((...(((........))))))).)))..))))....- ( -13.32)
>DroYak_CAF1 16633 98 + 1
CAACAACCUGAGUAUGGCAAUAAAA-----------------AACAAGUGACUACGACAA---CAGCAGUAGUCAUGGCUGAGCAAGUUGGAAAUGAAACCUCAACUGAAAUGCAUUU-
...........((((..(.......-----------------.....((((((((..(..---..)..))))))))((.((((...(((........))))))).)))..))))....- ( -18.10)
>consensus
CAACAACCCGAGUAUGGCAAUAAAA_______________AAAACAAGUGACUACGACAA___CAACAGUAGUCAUGGCUGAGCAAGUUGGAAAUGAAACCUCAACUGAAAUGCAUUU_
...........((((..(.............................((((((((.............))))))))((.((((...(((........))))))).)))..))))..... (-16.16 = -16.36 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:28 2006