Locus 5011

Sequence ID 2L_DroMel_CAF1
Location 14,395,295 – 14,395,389
Length 94
Max. P 0.774451
window7957

overview

Window 7

Location 14,395,295 – 14,395,389
Length 94
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 71.90
Mean single sequence MFE -23.22
Consensus MFE -8.38
Energy contribution -8.85
Covariance contribution 0.47
Combinations/Pair 1.12
Mean z-score -2.06
Structure conservation index 0.36
SVM decision value 0.54
SVM RNA-class probability 0.774451
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14395295 94 + 22407834
UAAGUAGGUGUGCAGAUAGAACA--GCCCAUAUGGGGCU-UGUUUAAUUUAUGAUUGGACAAUAGCU--UCAUAAAACUUAA--------------AUAUACUUUA-------UUUAUAU
((((((((((((......(((((--((((.....)))).-)))))..(((((((.............--)))))))......--------------.))))).)))-------))))... ( -20.52)
>DroSec_CAF1 16344 94 + 1
UACGUACGUGGGCAGAUUGAACA--GCCCAUAUGGGGCU-UGUUUAAUUUAUGAUUGGACAAUGGCU--UCAUAAAACGUAG--------------AUAUACUUUA-------UUUAUAU
(((((..((((((..........--))))))((((((((-(((((((((...)))))))))..))))--))))...))))).--------------..........-------....... ( -26.90)
>DroEre_CAF1 16467 89 + 1
---AU--GUACGCAGAUAGCAAG--GCCCAUAUGGGGCU-UGUUUAAUUUAUGAUUGGACAAUAGCU--UCAUAAAACGUAG--------------AUAUAUUUUA-------UUUAUAU
---((--.((((.....((((((--.(((....))).))-))))...(((((((.............--))))))).)))).--------------))........-------....... ( -20.42)
>DroYak_CAF1 16186 92 + 1
UACGU--GUGCGUAGAUAGAAGG--GCCCAUAUGGGGCU-UGUUUAAUUUAUGAGUGGACAAUAGCU--UCAUAAAACGUAG--------------AUAUAUUUUA-------UUUAUAU
...((--.(((((...((((..(--((((.....)))))-..)))).(((((((((........)).--)))))))))))).--------------))........-------....... ( -22.80)
>DroAna_CAF1 31143 76 + 1
-------GCCCAGAGACAGAACG--GC-CAUAUGGGGUU-UGU-UAAUUUACGAUUGGCCAAUAGCU--CCAUAAAGCGA-----------------------GUA-------UUUAUAU
-------.............((.--((-..(((((((((-.((-(((((...)))))))....))))--)))))..))..-----------------------)).-------....... ( -15.70)
>DroPer_CAF1 28290 117 + 1
UG-GU--GUCUAUAGAUACAAUGAGCCCCAUAUGGGUCUGUGUUUAAUUUAUGAUUGGACAAUGGCAGCCCAUAAAGUGUACGUACGAGUAUGAAUAUAUAUCUUACGUAUAGUUUAUAU
..-((--(((....))))).((((((....((((((.((((((((((((...))))))))....))))))))))...((((((((.((((((....)))).)).)))))))))))))).. ( -33.00)
>consensus
UA_GU__GUGCGCAGAUAGAACG__GCCCAUAUGGGGCU_UGUUUAAUUUAUGAUUGGACAAUAGCU__UCAUAAAACGUAG______________AUAUAUUUUA_______UUUAUAU
..............................((((((((..(((((((((...)))))))))...)))..))))).............................................. ( -8.38 =  -8.85 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:27 2006