Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,496,565 – 1,496,685 |
Length | 120 |
Max. P | 0.891109 |
Location | 1,496,565 – 1,496,685 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.17 |
Mean single sequence MFE | -40.30 |
Consensus MFE | -19.42 |
Energy contribution | -22.70 |
Covariance contribution | 3.28 |
Combinations/Pair | 1.28 |
Mean z-score | -2.31 |
Structure conservation index | 0.48 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.891109 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1496565 120 + 22407834 GCAGGAUACUGGCAGUUUACAAUGACUAGUGCCAAUCUGAAUGGAUUUCAGUUUUGUGAGAACUGCGAGGCCAUACUCGAUGUAGGCACUUCCCUAAUUGUUGUGCCUGAGCAAGUCCUA ..(((((.((.(((((((.((..((((....(((.......))).....))))...)).))))))).)).........(...(((((((.............)))))))..)..))))). ( -35.02) >DroSec_CAF1 114221 120 + 1 GCAGGAUACUGGCAGUUUACAAUGACAAGUGCCAAUCUGAAUGGCUUUCAGUUUUGUGAAAACUGCGAAGCCAUACUCGAUGUAGGCACUUCCCUAAUUGUUGUGCCAGAGCAAGUCCUA ..(((((.((((((....(((((...(((((((.(((.((((((((((((((((.....)))))).))))))))..)))))...))))))).....)))))..)))))).....))))). ( -44.20) >DroEre_CAF1 120437 120 + 1 GCAGGAUAUUGGCAAUUUACGAUGACGAGCGCCACGGUGAAUGGGUUUCAGUUUUGUGAGAACUGCGAGGCCAUACUCGAUGUGGGCACUUCCCUAAUUGUGGUGCCUGAGCCAGUCCUA ..(((((..((((......((....)).((((((((((....(((...((((((.....)))))).((((((.(((.....)))))).))))))..))))))))))....))))))))). ( -43.00) >DroWil_CAF1 169089 120 + 1 CAAGGAUAUUGGCAAUUUGAAAUGACCAGCGCCACACUGAACGAUCAAGAGUUUUGUGACAAUUGUCAGGCAAUUCUCGAUGUGGGCACUUCUCUAAUUGUUGUGCCCAACUCGGAGAUA ...((...((((((........)).))))..))...((((...(((.((((((.(.((((....)))).).)))))).))).(((((((..(.......)..)))))))..))))..... ( -33.40) >DroYak_CAF1 117409 120 + 1 GCAGGAUACUGGCAAUUUACCAUGACAAGUGCCUCGGUGAGUGGCUUUCAGUUUUGUGCGAACUGCGAGGCCAUAUUGGAUGUGGGCACUUCGCUAAUUGUUGUGCCUAAGCCAGUCCUA ..((((..(((((...(((((..(........)..)))))((((((((((((((.....)))))).))))))))........(((((((...((.....)).))))))).))))))))). ( -42.50) >DroAna_CAF1 140805 120 + 1 CAGGGCUAUUGGCAAUUCACAAUGGGCAGUGCCGACAUAAAUGGCACAAACUUUUGCAACAAAUGCGAGGCCAUACUCGAUGUGGGCACCUCUCUGAUGGUGAUUCCCCAAAAUGCCCUA .(((((..((((....((((...(((..(((((.((((..(((((.......((((((.....))))))))))).....)))).)))))..))).....))))....))))...))))). ( -43.71) >consensus GCAGGAUACUGGCAAUUUACAAUGACAAGUGCCAAGCUGAAUGGCUUUCAGUUUUGUGAGAACUGCGAGGCCAUACUCGAUGUGGGCACUUCCCUAAUUGUUGUGCCUGAGCAAGUCCUA ..(((((...((((....(((((....((((((........(((((((((((((.....)))))).)))))))(((.....)))))))))......)))))..)))).......))))). (-19.42 = -22.70 + 3.28)
Location | 1,496,565 – 1,496,685 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.17 |
Mean single sequence MFE | -36.48 |
Consensus MFE | -16.67 |
Energy contribution | -16.82 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.26 |
Mean z-score | -2.15 |
Structure conservation index | 0.46 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732999 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1496565 120 - 22407834 UAGGACUUGCUCAGGCACAACAAUUAGGGAAGUGCCUACAUCGAGUAUGGCCUCGCAGUUCUCACAAAACUGAAAUCCAUUCAGAUUGGCACUAGUCAUUGUAAACUGCCAGUAUCCUGC (((((..((((..((((..(((((..((..((((((...(((....((((.....(((((.......)))))....))))...))).))))))..)))))))....))))))))))))). ( -32.70) >DroSec_CAF1 114221 120 - 1 UAGGACUUGCUCUGGCACAACAAUUAGGGAAGUGCCUACAUCGAGUAUGGCUUCGCAGUUUUCACAAAACUGAAAGCCAUUCAGAUUGGCACUUGUCAUUGUAAACUGCCAGUAUCCUGC (((((......((((((..(((((..((.(((((((...(((....(((((((..((((((.....)))))).)))))))...))).))))))).)))))))....))))))..))))). ( -44.60) >DroEre_CAF1 120437 120 - 1 UAGGACUGGCUCAGGCACCACAAUUAGGGAAGUGCCCACAUCGAGUAUGGCCUCGCAGUUCUCACAAAACUGAAACCCAUUCACCGUGGCGCUCGUCAUCGUAAAUUGCCAAUAUCCUGC (((((.((((...(((.((((.....(((.....))).......(.((((.....(((((.......)))))....)))).)...)))).)))((....))......))))...))))). ( -31.20) >DroWil_CAF1 169089 120 - 1 UAUCUCCGAGUUGGGCACAACAAUUAGAGAAGUGCCCACAUCGAGAAUUGCCUGACAAUUGUCACAAAACUCUUGAUCGUUCAGUGUGGCGCUGGUCAUUUCAAAUUGCCAAUAUCCUUG ..((((..(((((....))))..)..))))((((((((((((((((.((...((((....))))...)).)))))))......))).))))))((.((........)))).......... ( -31.90) >DroYak_CAF1 117409 120 - 1 UAGGACUGGCUUAGGCACAACAAUUAGCGAAGUGCCCACAUCCAAUAUGGCCUCGCAGUUCGCACAAAACUGAAAGCCACUCACCGAGGCACUUGUCAUGGUAAAUUGCCAGUAUCCUGC ((((((((((...(((..........(((((.(((......((.....))....))).))))).((....))...)))....((((.(((....))).)))).....)))))..))))). ( -36.90) >DroAna_CAF1 140805 120 - 1 UAGGGCAUUUUGGGGAAUCACCAUCAGAGAGGUGCCCACAUCGAGUAUGGCCUCGCAUUUGUUGCAAAAGUUUGUGCCAUUUAUGUCGGCACUGCCCAUUGUGAAUUGCCAAUAGCCCUG ((((((...((((.((.((((.((..(...((((((.((((.....((((((..((.((((...)))).))..).)))))..)))).)))))).)..)).)))).)).))))..)))))) ( -41.60) >consensus UAGGACUGGCUCAGGCACAACAAUUAGGGAAGUGCCCACAUCGAGUAUGGCCUCGCAGUUCUCACAAAACUGAAAGCCAUUCAGAGUGGCACUGGUCAUUGUAAAUUGCCAAUAUCCUGC .............((((.............((((((..........((((.....(((((.......)))))....)))).......)))))).............)))).......... (-16.67 = -16.82 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:42 2006