Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,392,978 – 14,393,078 |
Length | 100 |
Max. P | 0.622445 |
Location | 14,392,978 – 14,393,078 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 82.33 |
Mean single sequence MFE | -29.57 |
Consensus MFE | -24.44 |
Energy contribution | -23.97 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.17 |
Mean z-score | -1.42 |
Structure conservation index | 0.83 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622445 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14392978 100 - 22407834 UCUCUUCUUUCACCC----------------AGCAGCUGGACAACAAAAGCAGUCCGUUGGCGCUAUUGGCCCAAACAUGCAGCGCCAUCGGGGCGGAUACCACAAACCCCAAGCU ...............----------------...((((((((..........))))(.(((((((..((.......))...))))))).)((((..(......)...)))).)))) ( -27.20) >DroPse_CAF1 22794 116 - 1 CCCUCUCUCUCCCCCUCUCUGUGUGUUUCGUUACAGCUGGACAACAAAAGCAGUCCAUUGGCGCUAUUGGCGCAAACAUGCAGCGCCAUUGGAGCGGACACCACAAAUCCCAAGCU .....(((((((....(.((((((((((.....(((.(((((..........))))))))((((.....)))))))))))))).).....)))).))).................. ( -30.60) >DroEre_CAF1 14081 100 - 1 UUACUUCUUUCACCC----------------AGCAGCUGGACAACAAGAGCAGUCCGUUGGCGCUAUUGGCGCAAACAUGCAGCGCCAUUGGGGCAGAUACCACAAACCCCAAACU ...............----------------(((.(((((((..........))))...))))))..((((((.........))))))((((((.............))))))... ( -27.12) >DroYak_CAF1 13805 98 - 1 --UCUUCUUUCACCC----------------AGCAGCUGGACAACAAAAGCAGUCCGUUGGCGCUAUUGGCCCAGACAUGCAGCGCCAUUGGGGCGGAUACCACAAACCCCAAGCU --.............----------------(((....((((..........))))..(((((((..((.......))...)))))))((((((..(......)...))))))))) ( -27.40) >DroAna_CAF1 29247 100 - 1 UCCUUUCUUCCGCCC----------------CACAGCUGGACAACAAAAGCAGCCCGUUGGCGCUAUUGGCCCAAACAUGCAGCGCCAUCGGGGCGGACACCACAAACCCCAAGCU ........(((((((----------------(...((((...........))))..(.(((((((..((.......))...))))))).))))))))).................. ( -35.70) >DroPer_CAF1 25003 114 - 1 CCCUCUCUCUCCCCCUCUCUG--UGUUUCGUUACAGCUGGACAACAAAAGCAGUCCAUUGGCGCUAUUGGCGCAAACAUGCAGCGCCAUUGGAGCGGACACCACAAAUCCCAAGCU .........(((.((...(((--((......)))))..)).........((..((((.(((((((..((.......))...))))))).))))))))).................. ( -29.40) >consensus UCCCUUCUUUCACCC________________AACAGCUGGACAACAAAAGCAGUCCGUUGGCGCUAUUGGCCCAAACAUGCAGCGCCAUUGGGGCGGACACCACAAACCCCAAGCU ..................................((((((.........((..((((.(((((((..((.......))...))))))).))))))((...)).......)).)))) (-24.44 = -23.97 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:23 2006