Locus 5006

Sequence ID 2L_DroMel_CAF1
Location 14,389,320 – 14,389,418
Length 98
Max. P 0.964181
window7947

overview

Window 7

Location 14,389,320 – 14,389,418
Length 98
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 76.41
Mean single sequence MFE -22.13
Consensus MFE -12.12
Energy contribution -12.88
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.45
Structure conservation index 0.55
SVM decision value 1.56
SVM RNA-class probability 0.964181
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14389320 98 - 22407834
CCCUCUAGCCGCGACCAUUUAUCAUUGGAGGCACUAUCCC------AUUCCAAGCCAU----------CCCA-ACCCGUUCCUCCCACC--AA---AACCCAUUCGACCAGGCUGGACUU
...(((((((.(((............(((((.((......------............----------....-....)).)))))....--..---.......)))....)))))))... ( -19.48)
>DroSec_CAF1 10395 99 - 1
CCCUCUAGCCGCGACCAUUUAUCAUUGGAGGCACUAUCCC------AUUCCAAGCCAU----------CCCAAACCCACUCCACCCACC--GA---AACCCAUUCGACCAGGCUGGACUU
...(((((((................((((((........------.......))).)----------))..................(--((---(.....))))....)))))))... ( -19.56)
>DroEre_CAF1 10223 96 - 1
CCCUCUAGCCGCGACCAUUUAUCAUUGGAGCCACCAUCCA------AUCCCAUCCU--------------G-AACCCACUCCUUCCACCGAAA---AACCCAUUCGACCAGGCUGGACUU
...(((((((.............((((((.......))))------))........--------------.-................((((.---......))))....)))))))... ( -18.10)
>DroAna_CAF1 25603 117 - 1
CCCUCUAGCCGCGACCAUUUAUCAUUGGAGGCAGUGACCCCCACGUAUCCCCCACCACCGGGGGGAGCCGCAAACCCAA-CCACCCACC--UACCGAACCCAUUCCACCAAGCUGGACUU
...((((((.((..(((........))).(((.(((.....)))...((((((.......)))))))))))........-.........--....(((....)))......))))))... ( -31.40)
>consensus
CCCUCUAGCCGCGACCAUUUAUCAUUGGAGGCACUAUCCC______AUCCCAAGCCAU__________CCCAAACCCACUCCACCCACC__AA___AACCCAUUCGACCAGGCUGGACUU
...(((((((.((((((........))).((......))................................................................)))....)))))))... (-12.12 = -12.88 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:18 2006