Locus 5005

Sequence ID 2L_DroMel_CAF1
Location 14,389,137 – 14,389,256
Length 119
Max. P 0.573840
window7946

overview

Window 6

Location 14,389,137 – 14,389,256
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.47
Mean single sequence MFE -22.20
Consensus MFE -20.68
Energy contribution -20.96
Covariance contribution 0.28
Combinations/Pair 1.08
Mean z-score -0.92
Structure conservation index 0.93
SVM decision value 0.08
SVM RNA-class probability 0.573840
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14389137 119 - 22407834
AUGAAAUUUAUUGGUUGGGGAUUUUGUG-AAAAUAUUUCUCCUACCGUUUGCAAAUUUAUUUUUCCUGCAAAAUAAUGGAGAUGAAAAAUCGCCAAAAGAUACAAAAAUAUUACAUCGCG
........((((..((((.((((((((.-...))...(((((.....((((((.............)))))).....)))))...)))))).))))..)))).................. ( -24.82)
>DroPse_CAF1 13963 120 - 1
AUAAAAUUUAUCGGUCGGGGAUUUUGUGGAAAAUAUUUCUUCUACCGUUUGCAAAUUUAUUUUUCCUGCAAAAUAAUGGAGAUGAAAAAUCGCCAAAAGAUACAAAAAUAUUACAAUGCA
........((((..(.((.((((((((((((........))))))(((((.((...(((((((......))))))))).))))).)))))).)).)..)))).................. ( -21.20)
>DroSec_CAF1 10199 119 - 1
CUGAAAUUUAUUGGUUGGGGAUUUUGUG-AAAAUAUUUCUCCUACCGUUUGCAAAUUUAUUUUUCCUGCAAAAUAAUGGAGAUGAAAAAUCGCCAAAAGAUACAAAAAUAUUACAUCGCG
........((((..((((.((((((((.-...))...(((((.....((((((.............)))))).....)))))...)))))).))))..)))).................. ( -24.82)
>DroSim_CAF1 9840 119 - 1
CUGAAAUUUAUUGGUUGGGGAUUUUGUG-AAAAUAUUUCUCCUACCGUUUGCAAAUUUAUUUUUCCUGCAAAAUAAUGGAGAUGAAAAAUCGCCAAAAGAUACAAAAAUAUUACAUCGCG
........((((..((((.((((((((.-...))...(((((.....((((((.............)))))).....)))))...)))))).))))..)))).................. ( -24.82)
>DroYak_CAF1 9935 119 - 1
AUGAAAUUUAUUGGAUGGGGAUUUUGUG-AAAAUAUUUCUUCUACCGUUUGCAAAUUUAUUUUUCCUGCAAAAUAAUGGAGAUGAAAAAUCGCCAAAAGAUACAAAAAUAUUACAUCGCG
........((((...(((.((((((((.-...))...(((((.....((((((.............)))))).....)))))...)))))).)))...)))).................. ( -19.22)
>DroAna_CAF1 25443 119 - 1
AUAAAAUUUAUUGGUUGGGGAUUUCAUG-AAAAUAUUUCUUCUACCGCUUGCAAAUUUAUUUUUCCUGCAAAAUAAUGGAGAUGAAAAAUCGCCAAAAGAUACAAAAAUAUUACAAUGCG
........((((..((((.((((..((.-...)).((((.(((.(((.(((((.............))))).....)))))).)))))))).))))..)))).................. ( -18.32)
>consensus
AUGAAAUUUAUUGGUUGGGGAUUUUGUG_AAAAUAUUUCUCCUACCGUUUGCAAAUUUAUUUUUCCUGCAAAAUAAUGGAGAUGAAAAAUCGCCAAAAGAUACAAAAAUAUUACAUCGCG
........((((..((((.((((((............(((((.....((((((.............)))))).....)))))...)))))).))))..)))).................. (-20.68 = -20.96 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:17 2006