| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,388,767 – 14,388,863 |
| Length | 96 |
| Max. P | 0.954104 |
| Location | 14,388,767 – 14,388,863 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 79.81 |
| Mean single sequence MFE | -26.45 |
| Consensus MFE | -16.93 |
| Energy contribution | -17.43 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.954104 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14388767 96 - 22407834 GCUGGCU-----------------GUGUGCGAAAGCAGGUAAAAUCGUAAUUCACUGAAAUUUACGAUUGCAGCAGCAGCU-UGGCAGCAGA----CGGGCAAAUGAAAGAAAAACAA ((((.((-----------------((.(((....))).....((((((((...........)))))))))))))))).(((-((........----)))))................. ( -29.30) >DroPse_CAF1 13569 118 - 1 GCAGACAGCCAGCAGUCCUGUAUACUGUGCGAAAGCAGGUAAAAUCGUAAUUCACUGAAAUUUACGAUUGCAGCACCACCACCGACAGCAGCAGCAAAAGCAAAUGGAAGAAAAACAA ........(((((.(((((((.((((.(((....))))))).((((((((...........))))))))))))..........))).))....((....))...)))........... ( -24.60) >DroSim_CAF1 9487 93 - 1 GCUGGCU-----------------GUGUGCGAAAGCAGGUAAAAUCGUAAUUCACUGAAAUUUACGAUUGCAGCAGCAGCU-UGGCAGC-------CGGGCAAAUGAAAGAAAAACAA ((((.((-----------------((.(((....))).....((((((((...........)))))))))))))))).(((-(((...)-------)))))................. ( -30.10) >DroEre_CAF1 9718 92 - 1 GCUGGCU-----------------CUUUGCGAAAGCAGGUAAAAUCGUAAUUCACUAAAAUUUACGAUUGCAGCAGCAGCU-UGGCAGC--------CGGCAAAUGAAAGAAAAACAA (((((((-----------------.(((((....)))))...((((((((...........))))))))(((((....)))-..)))))--------))))................. ( -28.10) >DroYak_CAF1 9559 92 - 1 GCUGGCU-----------------CUGUGCGAAAGCAGGUA-AAUCGUAAUUCACUGAAAUUUACGAUUGCAGCAGCAGCU-UGGCAGC-------CCGGCAAAUGAAAGAAAAACAA (((((..-----------------((((((....))((((.-((((((((...........))))))))((....)).)))-).)))).-------)))))................. ( -25.90) >DroAna_CAF1 25045 93 - 1 GCAGGCA-----------------CUAUGCGAAAGCAGGUAAAAUCGUAAUUCAUUGAAAUUUACGAUUGCAGCAGCAACACCAGCAGCAGU----AAAGCAAAUCAAGAAAAG---- ((..(((-----------------((.(((....))))))..((((((((...........)))))))))).((.((.......)).))...----...)).............---- ( -20.70) >consensus GCUGGCU_________________CUGUGCGAAAGCAGGUAAAAUCGUAAUUCACUGAAAUUUACGAUUGCAGCAGCAGCU_UGGCAGC_______CAGGCAAAUGAAAGAAAAACAA ((((.(.....................(((....))).((..((((((((...........))))))))...)).........).))))............................. (-16.93 = -17.43 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:16 2006