Locus 5003

Sequence ID 2L_DroMel_CAF1
Location 14,385,274 – 14,385,369
Length 95
Max. P 0.999703
window7944

overview

Window 4

Location 14,385,274 – 14,385,369
Length 95
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 91.34
Mean single sequence MFE -23.18
Consensus MFE -21.86
Energy contribution -22.34
Covariance contribution 0.47
Combinations/Pair 1.08
Mean z-score -2.74
Structure conservation index 0.94
SVM decision value 3.91
SVM RNA-class probability 0.999703
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14385274 95 + 22407834
---GUGCGGUGCACAAAUUGCAAUUUCUAUGCAAAUUUAUAACAAAUAAUUACUGACAGCCAUAUUUCAUUAGUAAUUGCAG---GCACUGCACACGGCGU
---(((((((((.....(((((.......)))))............((((((((((.............))))))))))...---)))))))))....... ( -26.62)
>DroSec_CAF1 6336 95 + 1
---GUGCGGUGCACAAAUUGCAAUUUCUAUGCAAAUUUAUAACAAAUAAUUACUGACAGCCAUAUUUCAUUAGUAAUUGCAG---GCACUGCACACGGCGC
---(((((((((.....(((((.......)))))............((((((((((.............))))))))))...---)))))))))....... ( -26.62)
>DroSim_CAF1 6008 98 + 1
GAAGUGCGGUGCACAAAUUGCAAUUUCUAUGCAAAUUUAUAACAAAUAAUUACUGACAGCCAUAUUUCAUUAGUAAUUGCAG---GCACUGCACACGGCGC
...(((((((((.....(((((.......)))))............((((((((((.............))))))))))...---)))))))))....... ( -26.82)
>DroEre_CAF1 6239 98 + 1
---GUGCGGCGCACAAAUUGCAAUUUCUAUGCAAAUUUAUAACAAAUAAUUACUGACAGCCAUAUUUCAUUAGUAAUUGCCAGCCGCAUUGCACACGACGC
---(((((((.......(((((.......)))))............((((((((((.............))))))))))...)))))))............ ( -21.82)
>DroYak_CAF1 5959 95 + 1
---GUGCGGUGCACAAAUUGCAAUUUCUAUGCAAAUUUAUAACAAAUAAUUACUGACAGCCAUAUUUCAUUAGUAAUUGCAG---GCAUUGCACACGGCGC
---(((((((((.....(((((.......)))))............((((((((((.............))))))))))...---)))))))))....... ( -24.22)
>DroAna_CAF1 22034 90 + 1
---GUGAAGUGCACAAAUUGCAAUUUCUAUGCAAAUUUAUAACAAAUAAUUACUGACAGCCAUAUUUCAUUAAUAAUUGCUG---CUACAACACA-----C
---(((..((((((((.(((((.......)))))..............((((.(((.(......).))).))))..))).))---).))..))).-----. ( -13.00)
>consensus
___GUGCGGUGCACAAAUUGCAAUUUCUAUGCAAAUUUAUAACAAAUAAUUACUGACAGCCAUAUUUCAUUAGUAAUUGCAG___GCACUGCACACGGCGC
...(((((((((.....(((((.......)))))............((((((((((.............))))))))))......)))))))))....... (-21.86 = -22.34 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:15 2006