Locus 5002

Sequence ID 2L_DroMel_CAF1
Location 14,383,911 – 14,384,012
Length 101
Max. P 0.778924
window7943

overview

Window 3

Location 14,383,911 – 14,384,012
Length 101
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 87.12
Mean single sequence MFE -43.78
Consensus MFE -26.08
Energy contribution -28.20
Covariance contribution 2.12
Combinations/Pair 1.06
Mean z-score -3.69
Structure conservation index 0.60
SVM decision value 0.55
SVM RNA-class probability 0.778924
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14383911 101 + 22407834
AGAGCUGACUGCAGCUGCUGAUGAGUAGAGUUGAGUUGGCUGGAAAGGC--CAGGAAAGGCUGACACGCUGCUGCUCACUCCUCGGCGGCUGCUCGGUCAGUU
..(((((((((((((((((((.((((.((((..(((.(((((....(((--(......))))..)).)))))))))))))).)))))))))))..)))))))) ( -51.30)
>DroSec_CAF1 4979 97 + 1
AGAGCUGACUGCAGCUGCUGAUGAGUAGAGUUGAGUUGGCUGGAAAGGCAACAGGAAAGGCUGACACGCU---GCUCACUCCUCG---GCUGCUCGGUCAGUU
..(((((((((.(((.(((((.((((.((((...((((.((....)).))))......(((......)))---)))))))).)))---)).)))))))))))) ( -45.00)
>DroSim_CAF1 4651 97 + 1
AGAGCUGACUGCAGCUGCUGAUGAGUAGAGUUGAGUUGGCUGGAAAGGCAACAGGAAAGGCUGACACGCU---GCUCACUCCUCG---GCUGCUCGGUCAGUU
..(((((((((.(((.(((((.((((.((((...((((.((....)).))))......(((......)))---)))))))).)))---)).)))))))))))) ( -45.00)
>DroYak_CAF1 4604 90 + 1
AAAGCUGACUGCAGCUGCUGAUGAGUAGAGUUGAGUUGGCUGGAAG-GC--CGGGAAAGGAUGCCAUACU---GCUCCCUCCC-U------CCCCGGUCAGUU
..(((..(((.(((((.(((.....)))))))))))..)))....(-((--((((..(((..((......---))..)))...-.------.))))))).... ( -33.80)
>consensus
AGAGCUGACUGCAGCUGCUGAUGAGUAGAGUUGAGUUGGCUGGAAAGGC__CAGGAAAGGCUGACACGCU___GCUCACUCCUCG___GCUGCUCGGUCAGUU
..(((((((((((((...(((.((((.((((..((((((((.....)))..(((......))).)).)))...)))))))).)))...)))))..)))))))) (-26.08 = -28.20 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:14 2006