| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,383,630 – 14,383,735 |
| Length | 105 |
| Max. P | 0.956257 |
| Location | 14,383,630 – 14,383,735 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.71 |
| Mean single sequence MFE | -26.93 |
| Consensus MFE | -12.29 |
| Energy contribution | -12.29 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.46 |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.956257 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14383630 105 + 22407834 AUGCUCUGACUUUUUCAAUUGCACUUGUGCCAGUUGACUGAAGAG---------------CACUGGCAAUUAUAUAUGGCGUCAUAACACACGUUAUGAUCUCAUCAAUUCAGGCUGCUU ..((.((((.......((((((....(((((((....)))....)---------------)))..))))))....((((.((((((((....)))))))).))))....))))))..... ( -28.70) >DroPse_CAF1 7300 116 + 1 ----AGUAUAUUUUUCAAUACUACUUUUAUGAUUCGAAUGAGAAACGUGAAGGAUACUUGUACGAGUAGAUGUAUAUGGCAACAUAACAUACGUUAUGAUCUCAUCAAUUCAGAAUGCCU ----.((((((...((.......((((((((.(((......))).)))))))).(((((....))))))).))))))((((.((((((....))))))......((......)).)))). ( -26.60) >DroSec_CAF1 4717 95 + 1 AUGCUCUGACUUUUUCAAUUCCACUUGUGCCAGUUGAC-------------------------UGGCAAUUAUAUAUGGCGUCAUAACACACGUUAUGAUCUCAUCAAUUCAGGCUGCCU ..((.((((..................((((((....)-------------------------))))).......((((.((((((((....)))))))).))))....))))))..... ( -26.20) >DroSim_CAF1 4389 95 + 1 AUGCUUUGACUUUUUCAAUUCCACUUGUGCCAGUUGAC-------------------------UGGCAAUUAUAUUUGGCGUCAUAACACACGUUAUGAUCUCAUCAAUUCAGGCUGCCU ..((((.((..................((((((....)-------------------------)))))........(((.((((((((....)))))))).))).....))))))..... ( -22.90) >DroEre_CAF1 4682 105 + 1 AUGCUGUGACUUCUUCAAUUCCACUUGUGUCAGUUGAAUGGAGAA---------------AACUGGCCUUUAUAUAUGGCGUCAUAACAUACGUUAUGAUCUCAUCAAUUCAGGCUGCCU ..((......(((((((.(((.(((......))).))))))))))---------------....(((((..((..((((.((((((((....)))))))).))))..))..))))))).. ( -27.70) >DroYak_CAF1 4334 105 + 1 AUGCCUUGACUUUUUCAAUUGCACUUGUGCCAGUUGAAUGGGGAA---------------AACUGGCCACUAUAUAUGGCGUCAUAACACACGUUAUGAUCUCAUCAAUUCAGGCUGCUU ..((((.((((..((((((((((....)).))))))))..))((.---------------.....((((.......))))((((((((....))))))))....))...))))))..... ( -29.50) >consensus AUGCUCUGACUUUUUCAAUUCCACUUGUGCCAGUUGAAUG__GAA________________ACUGGCAAUUAUAUAUGGCGUCAUAACACACGUUAUGAUCUCAUCAAUUCAGGCUGCCU ..............(((((..((....))...)))))...........................(((........((((.((((((((....)))))))).))))........))).... (-12.29 = -12.29 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:13 2006