Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,379,834 – 14,379,927 |
Length | 93 |
Max. P | 0.698795 |
Location | 14,379,834 – 14,379,927 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 79.75 |
Mean single sequence MFE | -23.47 |
Consensus MFE | -16.56 |
Energy contribution | -16.50 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.07 |
Mean z-score | -1.37 |
Structure conservation index | 0.71 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698795 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14379834 93 + 22407834 -----CUAA-CCACA-----CACCUUAUAGCCCUGUUUGAAACUGCGACAAUCGUAGUCGAAAUUAUGCUGCAAACCCUGCAGAAAGGCGAAGAACCCAUUUUU -----....-.....-----...(((...(((...(((((..(((((.....))))))))))......(((((.....)))))...))).)))........... ( -19.90) >DroPse_CAF1 1803 103 + 1 UCUGUAUAA-UGAUACCUUAUACCUUAUAGCCCUGCUUAAAGCUGCGGCAAUCGUAGUCAAAGUUGUGCUGCAGUCCCUGCAGAAAGGCAAAGAAACCAUUGCC (((((((((-.......))))))......(((((((.....(((((((((..(.........)...)))))))))....))))...)))..))).......... ( -26.50) >DroEre_CAF1 1026 96 + 1 -----GUUUUUCUCAC---ACACCUUGUAGCCCUGUUUGAAACUGCGGCAAUCGUAGUCGAAAUUGUGCUGCAAGCCCUGCAGAAAGGCGAAGAAACCAUUCUU -----((((((((((.---....((((((((.(..(((((..(((((.....))))))))))...).))))))))...)).)))))))).(((((....))))) ( -27.90) >DroYak_CAF1 688 93 + 1 -----CUUU---UCAC---ACACCUUAUAGCCCUGUUUGAAACUGCGACAAUCGUAGUCGAAAUUGUGCUGCAAACCCUGCAGGAAAGCAAAAAACCCAUUCUU -----((((---((..---.........(((.(..(((((..(((((.....))))))))))...).)))(((.....))).))))))................ ( -17.90) >DroAna_CAF1 14184 98 + 1 UCC--CUAA-UGGUAC---ACACCUUGUAGCCCUGCUUAAAACUGCGGCAAUCGUAGUCGAAAUUAUGCUGCAAGCCCUGCAGGAAGGCAAAGAACCCAUUCUU ...--..((-((((((---(.....))))(((((((.......(((((((.(((....))).....)))))))......))))...))).......)))))... ( -23.72) >DroPer_CAF1 3348 103 + 1 UCUGUAUAA-UGAUACCUUAUACCUUAUAGCCCUGUUUAAAGCUGCGGCAAUCGUAGUCAAAGUUGUGCUGCAGUCCCUGCAGAAAGGCAAAGAAACCAUUGCC (((((((((-.......))))))......(((((((.....(((((((((..(.........)...)))))))))....))))...)))..))).......... ( -24.90) >consensus _____CUAA_UGACAC___ACACCUUAUAGCCCUGUUUAAAACUGCGGCAAUCGUAGUCGAAAUUGUGCUGCAAACCCUGCAGAAAGGCAAAGAAACCAUUCUU .............................(((.........((((((.....))))))..........(((((.....)))))...)))............... (-16.56 = -16.50 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:12 2006