Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,495,741 – 1,495,884 |
Length | 143 |
Max. P | 0.874268 |
Location | 1,495,741 – 1,495,844 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 80.39 |
Mean single sequence MFE | -35.58 |
Consensus MFE | -27.72 |
Energy contribution | -27.70 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.47 |
Mean z-score | -1.47 |
Structure conservation index | 0.78 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767684 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1495741 103 + 22407834 AGACCAUGAGAGUCAGGUGGAACCAUUUCAAGUUAUUGCUGUUUUGGCUAACGGUUUUAGCUGUCUUGGCCUUUGAAGCCGAGGCCAGGAAGCGUGUUAGGAU ...((.(((((....((.....)).)))))(((((..((((((......))))))..))))).((((((((((.......)))))))))).........)).. ( -31.50) >DroSec_CAF1 113397 103 + 1 AGACCAUGAGGGUCAGGUGGAACCAUUCCAAGUUAUUGCUGUUCUGGCUAACAGUUUUAGCUGUCUUGGCCUUUGAAGCGGAGGCCAGGAAGCGUGUUAGGAU .((((.....)))).((.....))..(((.(((((..((((((......))))))..))))).((((((((((((...)))))))))))).........))). ( -38.30) >DroSim_CAF1 115957 103 + 1 AGACCAUGAGGGUCAGGUGGAACCAUUUCAAGUUAUUGCUGUUCUGGCUAACAGUUUUAGCUGUCUUGGCCUUUGAAGCGGAGGCCAGGAAGCGUGUUAGGAU .((((.....))))........((......(((((..((((((......))))))..))))).((((((((((((...)))))))))))).........)).. ( -35.70) >DroEre_CAF1 119607 103 + 1 GGACCAUGAGGGACAGAUGGAGCCGUUUCCAGCUAUUGCUGUUCUGGCUAACAGUCUUGGCCGUCUGGGCCUUUGAAGUGGAGGCCAGGAAGCGCGUUAAGCU (..((....))..)((....(((((((((((((....))))..((((((..((.((..((((.....))))...))..))..)))))))))))).)))...)) ( -38.30) >DroYak_CAF1 116585 103 + 1 GGACCAUGGGGGUCAGGUGGAACCACUUCAAGUUACUGCUGCUCUGGCUAACAGUCUUGGCUGUCUUGGCCUUGGAAGUGGAGGCCAGGAAGCGCGUUAAGAU .((((.....))))(((((....)))))((((..((((..((....))...))))))))(((.((((((((((.......))))))))))))).......... ( -36.50) >DroAna_CAF1 139975 100 + 1 CGACCACGAUGGUCAAGUCGAAGUGUUGUAAGC---UGGUGUUUUGGAUGGCAUUGGUGGUUCUCCUAGCCUCCAAAGUGGAGGCCCGCAAGCGCCUCAAGGU .((((.....)))).....((.(((((((..((---..(((((......)))))..))..........((((((.....))))))..)).))))).))..... ( -33.20) >consensus AGACCAUGAGGGUCAGGUGGAACCAUUUCAAGUUAUUGCUGUUCUGGCUAACAGUUUUAGCUGUCUUGGCCUUUGAAGCGGAGGCCAGGAAGCGCGUUAAGAU .((((.....)))).((((....))))...(((((..((((((......))))))..))))).(((((((((((.....)))))))))))............. (-27.72 = -27.70 + -0.02)
Location | 1,495,779 – 1,495,884 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 81.52 |
Mean single sequence MFE | -36.72 |
Consensus MFE | -26.06 |
Energy contribution | -26.73 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.39 |
Mean z-score | -2.34 |
Structure conservation index | 0.71 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.874268 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1495779 105 + 22407834 CUGUUUUGGCUAACGGUUUUAGCUGUCUUGGCCUUUGAAGCCGAGGCCAGGAAGCGUGUUAGGAUUGGAUUGCACAAGAAUCCUGAACCAAUUGAGGAGAACAUA ...(((((((...((((((((((..((((((((((.......)))))))))).....))))))))))....)).))))).((((.((....)).))))....... ( -33.90) >DroSec_CAF1 113435 105 + 1 CUGUUCUGGCUAACAGUUUUAGCUGUCUUGGCCUUUGAAGCGGAGGCCAGGAAGCGUGUUAGGAUUGGAUUGCACAAGAAUCCUGAACCAAUUGAGGACAACAUA .((((((.(((..((((....))))((((((((((((...)))))))))))))))(..((((((((............))))))))..).....))))))..... ( -36.20) >DroSim_CAF1 115995 105 + 1 CUGUUCUGGCUAACAGUUUUAGCUGUCUUGGCCUUUGAAGCGGAGGCCAGGAAGCGUGUUAGGAUUGGAUUGCACAAGAAUCCUGAACCAAUUGAGGACAACAUA .((((((.(((..((((....))))((((((((((((...)))))))))))))))(..((((((((............))))))))..).....))))))..... ( -36.20) >DroEre_CAF1 119645 105 + 1 CUGUUCUGGCUAACAGUCUUGGCCGUCUGGGCCUUUGAAGUGGAGGCCAGGAAGCGCGUUAAGCUCGGAUUGCACAAGAAUCCCGAGCCCAUCGAGGAGAACAUA .((((((((((.....(((((((.((((((((((((.....)))))))....(((.......)))))))).)).)))))......))))........)))))).. ( -37.00) >DroYak_CAF1 116623 105 + 1 CUGCUCUGGCUAACAGUCUUGGCUGUCUUGGCCUUGGAAGUGGAGGCCAGGAAGCGCGUUAAGAUUGGAUUGCACAAGAAUCCUGAGCCAAUUGAGGAGAACAUU ((.((((((((...(((((((((..((((((((((.......)))))))))).....)))))))))(((((.......)))))..)))))...))).))...... ( -39.20) >DroAna_CAF1 140010 105 + 1 GUGUUUUGGAUGGCAUUGGUGGUUCUCCUAGCCUCCAAAGUGGAGGCCCGCAAGCGCCUCAAGGUUGGGAUACACAAAAAUCCUCAGUCUAGUCAUCAAAAUGUG (..(((((.(((((.((((.((((.....)))).))))....(((((.(....).))))).((..((((((........)))).))..)).))))))))))..). ( -37.80) >consensus CUGUUCUGGCUAACAGUUUUAGCUGUCUUGGCCUUUGAAGCGGAGGCCAGGAAGCGCGUUAAGAUUGGAUUGCACAAGAAUCCUGAACCAAUUGAGGAGAACAUA ..(((((.((...((((((((((..(((((((((((.....))))))))))).....))))))))))....))...)))))........................ (-26.06 = -26.73 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:40 2006