Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 212,648 – 212,749 |
Length | 101 |
Max. P | 0.616941 |
Location | 212,648 – 212,749 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 79.81 |
Mean single sequence MFE | -32.99 |
Consensus MFE | -18.28 |
Energy contribution | -19.06 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.13 |
Mean z-score | -1.91 |
Structure conservation index | 0.55 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616941 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 212648 101 - 22407834 AUCGGGGUCCUCUUCCAGUUCAGCAGCUGCUGCGGGACUGGCAGCUAAUCUGCCCAGUCAAACUACAAUAACCAUAGCUCCUCCCAUUAGCAGUGGAGCCA ...((((((((.(..((((......))))..).))))))(((((.....))))).................))...(((((.............))))).. ( -28.42) >DroPse_CAF1 6250 98 - 1 AGGAUCCUCCUCAUCGAACGCGGCAGCUGCU---GGCCUGGCGGCCAAUCUGCCGUCGCAGACUACCAUCACCAUAGCGCCGCCCAUCAGCAGUGGAGCCA (((.....)))..........(((.((((((---((...((((((...(((((....)))))(((.........))).))))))..))))))))...))). ( -36.60) >DroSim_CAF1 4925 101 - 1 AUCAGGCUCCUCUUCCAGUUCAGCAGCUGCUGCGGGACUGGCAGCUAAUCUGCCCAGUCAAACUACAAUAACCAUAGCUCCUCCCAUUAGCAGUGGAGCCA ....((((((.......(.....).(((((((.(((((((((((.....))).))))))...(((.........)))......))..))))))))))))). ( -33.00) >DroWil_CAF1 6503 98 - 1 UGGCGGCAAUUCUUCCUCCUCGGCAGCUGCU---GGCAUAGCCGCCAAUCUGCCAUCGCAGACCACCAUCACAAUUGCUCCGCCCAUUAGCAGUGGAGCCA (((((((.......((.....))..((....---.))...))))))).(((((....)))))..............(((((((.........))))))).. ( -32.70) >DroYak_CAF1 6985 101 - 1 GUCAGGCUCUUCUUCCAGUUCAGCAGCUGCUGCGGGACUGGCAGCUAAUCUGCCCAGUCAAACUACAAUAACCAUAGCUCCUCCCAUUAGCAGUGGAGCCA ....(((((.......((((((((....))))...(((((((((.....))).)))))).))))........(((.(((.........))).)))))))). ( -30.60) >DroPer_CAF1 6379 98 - 1 AGGAUCCUCCUCAUCGAACGCGGCAGCUGCU---GGCCUGGCGGCCAAUCUGCCGUCGCAGACUACCAUCACCAUAGCGCCGCCCAUCAGCAGUGGAGCCA (((.....)))..........(((.((((((---((...((((((...(((((....)))))(((.........))).))))))..))))))))...))). ( -36.60) >consensus AGCAGGCUCCUCUUCCAGCUCAGCAGCUGCU___GGACUGGCAGCCAAUCUGCCCACGCAAACUACAAUAACCAUAGCUCCGCCCAUUAGCAGUGGAGCCA ....((((((...............((((((...(((..(((((.....)))))........(((.........)))....)))....)))))))))))). (-18.28 = -19.06 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:11 2006