Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 23,960 – 24,055 |
Length | 95 |
Max. P | 0.531827 |
Location | 23,960 – 24,055 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 82.60 |
Mean single sequence MFE | -25.67 |
Consensus MFE | -18.72 |
Energy contribution | -18.31 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.37 |
Mean z-score | -1.41 |
Structure conservation index | 0.73 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531827 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 23960 95 + 22407834 UAACUAGUAAAUUUACAAUGUUUGAGGAUAGCUCCGAAGACAAAAAAUCACGAAGUCUCCAUUGGGUGGACCUUGAGACAAGAACUACACGACUU ....((((..........(((((..(((....)))..)))))............(((((....(((....))).)))))....))))........ ( -18.20) >DroPse_CAF1 2000 95 + 1 UAACGAGUAAAUUCACAAUAUUUGAGGACAGCUCCGAAGACAGAAAGUCACGGAGCUUCCACUGCGUUGACCGUGAGACGAGCACCACGCGGCUC ...((((((.........)))))).(((.(((((((..(((.....))).)))))))))).((((((((..((.....))..))..))))))... ( -29.70) >DroEre_CAF1 2095 95 + 1 UAACUAGUAAAUUAACUAUGUUUGAGGAUAGCUCCGAAGACAAGAAAUCACGGAGUUUCCAUUGGGUGGACCUUGAGACAAGAACUACACGACUU .(((((((......)))).)))...(((.(((((((..((.......)).)))))))))).(((.((((..((((...))))..)))).)))... ( -20.30) >DroYak_CAF1 2059 95 + 1 UAACUAGCAAAUUUACUAUGUUUGAGGAUAGCUCCGAGGACAAGAAAUCCCGGAGUUUCCAUUGUGUGGACCUUGAGACAAGAACUACACGACUU .......(((((.......))))).(((.(((((((.(((.......))))))))))))).((((((((..((((...))))..))))))))... ( -29.70) >DroAna_CAF1 2107 95 + 1 UGACCAGCAAGUUCACGAUAUUUGACGAGAGCUCUGAGGCCAGAAAGUCUCGCAGUUUCCACUGGGUGGACCUUGAAACGAGCACCACUCGGCUC ......((.(((((.((........)).)))))..(((((......)))))))........((((((((..((((...))))..))))))))... ( -26.40) >DroPer_CAF1 2029 95 + 1 UAACGAGUAAAUUCACAAUAUUUGAGGACAGCUCCGAAGACAGAAAGUCACGGAGCUUCCACUGCGUUGACCGUGAGACGAGCACCACGCGGCUC ...((((((.........)))))).(((.(((((((..(((.....))).)))))))))).((((((((..((.....))..))..))))))... ( -29.70) >consensus UAACUAGUAAAUUCACAAUAUUUGAGGAUAGCUCCGAAGACAAAAAAUCACGGAGUUUCCACUGGGUGGACCUUGAGACAAGAACCACACGACUC .......(((((.......))))).(((.(((((((..............)))))))))).((((((((..((((...))))..))))))))... (-18.72 = -18.31 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:04 2006