| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,378,818 – 14,378,932 |
| Length | 114 |
| Max. P | 0.653931 |
| Location | 14,378,818 – 14,378,932 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 94.15 |
| Mean single sequence MFE | -33.13 |
| Consensus MFE | -30.99 |
| Energy contribution | -31.00 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653931 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14378818 114 - 22407834 GCUAAUCUACUUCUUCUGCAUGAGAAUCUGUGGCAGCUGCCGCGAUCGCAGGAAGCACAAGAUACAACAGCAGAACUCAGUGGAUUUACCAGAGGAAAAAUCUGAGAACUAGUC (((((((((((..((((((.((...(((((((((....)))))....((.....))...))))....))))))))...)))))))....((((.......)))).....)))). ( -30.80) >DroSim_CAF1 28952 114 - 1 GCUAAUCUACUUCUUCUGCAUGAGAAUCUGCGGCAGCUGUCGCGAUCGCAGGAAGCACAAGAUACAACAGCAGAACUCAGUGGAUGUACCAGAGGAAAACUCUGAGAACUAGUC (((((((((((..((((((.((...(((((((((....)))))....((.....))...))))....))))))))...)))))))((.((((((.....))))).).)))))). ( -34.70) >DroYak_CAF1 28468 114 - 1 GCUGAUCUACUUCUUCUGCAUGAGAAUCUGCGGCAGCUGUCGCGAUCGACGAAAGCACAAGUUACAACAGCAGAACUCAGUGGAUGUACCAGAGGAAAACUCUGAGAAUUAGUC (((((((((((..((((((.((.((.((.(((((....)))))))))(.(....))...........))))))))...)))))))....(((((.....))))).....)))). ( -33.90) >consensus GCUAAUCUACUUCUUCUGCAUGAGAAUCUGCGGCAGCUGUCGCGAUCGCAGGAAGCACAAGAUACAACAGCAGAACUCAGUGGAUGUACCAGAGGAAAACUCUGAGAACUAGUC (((((((((((..((((((.((.((.((.(((((....)))))))))((.....))...........))))))))...)))))))....(((((.....))))).....)))). (-30.99 = -31.00 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:11 2006