Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,378,517 – 14,378,625 |
Length | 108 |
Max. P | 0.518450 |
Location | 14,378,517 – 14,378,625 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.75 |
Mean single sequence MFE | -23.04 |
Consensus MFE | -16.56 |
Energy contribution | -15.96 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.16 |
Mean z-score | -1.80 |
Structure conservation index | 0.72 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518450 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14378517 108 + 22407834 CAAUCAAUUAAUUAGAGCAAAUCAAUUGCUUUGACCGUGUGCUAAUCACAUGCAUUUUUAAUUUGUAAUCGAUUAAAUUACCUGGCAAACUGGAAACU------------CAGUACUACA ...........(((((((((.....)))))))))..(((((((.......(((.....(((((((........)))))))....)))....(....).------------.))))).)). ( -20.10) >DroSec_CAF1 26539 120 + 1 CAAUCAAUUAAUUAGAGCAAAUCAAUUGCUUUGACCAUGUGCUAAUCACAUGCAUUUUUAAUUUGUAAUCGAUUAAAUUACCUGGUAAACUGGAAACUCAAUUGGUCUCUCAGUACUACA .((((.((((.(((((((((.....))))))))).((((((.....)))))).............)))).))))........((((..((((((.(((.....))).)).)))))))).. ( -22.80) >DroSim_CAF1 28641 120 + 1 CAAUCAAUUAAUUAGAGCAAAUCAAUUGCUUUGACCAUGUGCUAAUCACAUGCAUUUUUAAUUUGUAAUCGAUUAAAUUACCUGGUAAACUGGAAACUCAAUUGGUCUCUCAGUACUACA .((((.((((.(((((((((.....))))))))).((((((.....)))))).............)))).))))........((((..((((((.(((.....))).)).)))))))).. ( -22.80) >DroEre_CAF1 27231 120 + 1 CAAUCAAUUAAUUAGAGCAAAUCAAUUGCACUGGCCGUGUGCUAAUCACAUGCAUUUUUCAUUUGUAAUCGAUUAAAUUACCUGGCCAACUGGAAACUCAAUUGGGCUCCCAUUACUACA ........((((..((((...(((((((...((((((.(((.(((((...((((.........))))...)))))...))).))))))...(....).)))))))))))..))))..... ( -26.50) >DroYak_CAF1 28159 120 + 1 CAAUCAAUUAAUUAGAGCAAAUCAAUUGCUUUGGUUGUGUGCUAAUCACAUGCAUUUUUAAUUUGUAAUCGAUUAAAAUACCUGGCAAACUGGAAACUCAAUUGGGCUCUCAUUACUACU ........((((.(((((...(((((((.((..((((((((.....)))))((..((((((((.......))))))))......)).)))..))....)))))))))))).))))..... ( -23.00) >consensus CAAUCAAUUAAUUAGAGCAAAUCAAUUGCUUUGACCGUGUGCUAAUCACAUGCAUUUUUAAUUUGUAAUCGAUUAAAUUACCUGGCAAACUGGAAACUCAAUUGGGCUCUCAGUACUACA .((((.((((.(((((((((.....))))))))).((((((.....)))))).............)))).)))).......(..(....)..)........................... (-16.56 = -15.96 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:10 2006