Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,376,570 – 14,376,730 |
Length | 160 |
Max. P | 0.860402 |
Location | 14,376,570 – 14,376,690 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.00 |
Mean single sequence MFE | -27.54 |
Consensus MFE | -27.20 |
Energy contribution | -27.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.33 |
Structure conservation index | 0.99 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789264 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14376570 120 - 22407834 AUUUCUCGCCUUCUCACACUUUGUGUGUCUUUCAAUUUAAUUUAUUAAUCGUGCGUGUUCAUCCGCACUACAUUUGUGGGCGGCUAAUGGCUAUGGCAACGUCUUGGCCCAUUUCAGAUC ...(((.(((..((((((...((((((.....))................(((((........)))))))))..)))))).)))....(((((.(((...))).)))))......))).. ( -27.30) >DroSec_CAF1 24720 120 - 1 AUUUCUCGCCUUCUCACACUUUGUGUGUCUUUCAAUUUAAUUUAUUAAUCGUGCGUGUUCAUCCGCACUACAUUUGUGGGCGGCUAAUGGCUAUGGCAACGUCUUGGCCCAUUUCAGAUC ...(((.(((..((((((...((((((.....))................(((((........)))))))))..)))))).)))....(((((.(((...))).)))))......))).. ( -27.30) >DroSim_CAF1 26822 120 - 1 AUUUCUCGCCUUCUCACACUUUGUGUGUCUUUCAAUUUAAUUUAUUAAUCGUGCGUGUUCAUCCGCACUACAUUUGUGGGCGGCUAAUGGCUAUGGCAACGUCUUGGCCCAUUUCAGAUC ...(((.(((..((((((...((((((.....))................(((((........)))))))))..)))))).)))....(((((.(((...))).)))))......))).. ( -27.30) >DroEre_CAF1 25373 120 - 1 AUUUCUCGCCUUCUCACACUUUGUGUGUCUUUCAAUUUAAUUUAUUAAUCGUGCGUGUUCAUCCGCACUACAUUUGUGGGCGGCUAAUGGCUAUGGCAACGUCUUGGCCCAUUUCAUUUC .......(((..((((((...((((((.....))................(((((........)))))))))..)))))).)))....(((((.(((...))).)))))........... ( -27.20) >DroYak_CAF1 26263 120 - 1 AUUUCUCGCCUUCUCACACUUUGUGUGUCUUUUAAUUUAAUUUAUUAAUCGUGCGUGUUCAUCCGCACUACAUUUGUGGGCGGCUAAUGGCUAUGGCAACGUCUUGGCCCAUUUCAGAUC ...(((.(((..((((((....(((((....(((((.......)))))..(((((........)))))))))).)))))).)))....(((((.(((...))).)))))......))).. ( -28.60) >consensus AUUUCUCGCCUUCUCACACUUUGUGUGUCUUUCAAUUUAAUUUAUUAAUCGUGCGUGUUCAUCCGCACUACAUUUGUGGGCGGCUAAUGGCUAUGGCAACGUCUUGGCCCAUUUCAGAUC .......(((..((((((....(((((.........((((....))))..(((((........)))))))))).)))))).)))....(((((.(((...))).)))))........... (-27.20 = -27.20 + -0.00)
Location | 14,376,610 – 14,376,730 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.67 |
Mean single sequence MFE | -25.40 |
Consensus MFE | -23.80 |
Energy contribution | -24.00 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.60 |
Structure conservation index | 0.94 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14376610 120 + 22407834 CCCACAAAUGUAGUGCGGAUGAACACGCACGAUUAAUAAAUUAAAUUGAAAGACACACAAAGUGUGAGAAGGCGAGAAAUACGAAUUUUCCAAAUGAAUUUGUUAAACACUGUCGACUGG .(((........(((((........)))))(.((((((((((...(((....((((.....))))(((((..(((....).))..))))))))...)))))))))).).........))) ( -25.70) >DroSec_CAF1 24760 120 + 1 CCCACAAAUGUAGUGCGGAUGAACACGCACGAUUAAUAAAUUAAAUUGAAAGACACACAAAGUGUGAGAAGGCGAGAAAUACGAAUUUUCCAAAUGAAUUUGUUAAACACUGUCGACUGG .(((........(((((........)))))(.((((((((((...(((....((((.....))))(((((..(((....).))..))))))))...)))))))))).).........))) ( -25.70) >DroSim_CAF1 26862 120 + 1 CCCACAAAUGUAGUGCGGAUGAACACGCACGAUUAAUAAAUUAAAUUGAAAGACACACAAAGUGUGAGAAGGCGAGAAAUACGAAUUUUCCAAAUGAAUUUGUUAAACACUGUCGACUGG .(((........(((((........)))))(.((((((((((...(((....((((.....))))(((((..(((....).))..))))))))...)))))))))).).........))) ( -25.70) >DroEre_CAF1 25413 120 + 1 CCCACAAAUGUAGUGCGGAUGAACACGCACGAUUAAUAAAUUAAAUUGAAAGACACACAAAGUGUGAGAAGGCGAGAAAUACGAAUUUUCCAAAUGAAUUUGUUAAACACUGUCGACUGG .(((........(((((........)))))(.((((((((((...(((....((((.....))))(((((..(((....).))..))))))))...)))))))))).).........))) ( -25.70) >DroYak_CAF1 26303 120 + 1 CCCACAAAUGUAGUGCGGAUGAACACGCACGAUUAAUAAAUUAAAUUAAAAGACACACAAAGUGUGAGAAGGCGAGAAAUACGAAUUUUCCAAAUGAAUUUGUUAAACACUGUCGACUGG .(((........(((((........)))))(.((((((((((..........((((.....))))(((((..(((....).))..)))))......)))))))))).).........))) ( -24.20) >consensus CCCACAAAUGUAGUGCGGAUGAACACGCACGAUUAAUAAAUUAAAUUGAAAGACACACAAAGUGUGAGAAGGCGAGAAAUACGAAUUUUCCAAAUGAAUUUGUUAAACACUGUCGACUGG .(((........(((((........)))))(.((((((((((...(((....((((.....))))(((((..((.......))..))))))))...)))))))))).).........))) (-23.80 = -24.00 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:09 2006