Locus 4996

Sequence ID 2L_DroMel_CAF1
Location 14,376,276 – 14,376,390
Length 114
Max. P 0.635740
window7936

overview

Window 6

Location 14,376,276 – 14,376,390
Length 114
Sequences 4
Columns 115
Reading direction reverse
Mean pairwise identity 84.96
Mean single sequence MFE -18.93
Consensus MFE -14.38
Energy contribution -15.12
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.76
SVM decision value 0.21
SVM RNA-class probability 0.635740
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14376276 114 - 22407834
UUCUUUCCUUAGCCGUCAAUAAUAAUGUACAU-UUUUUAUUGAUUGCGUUCUGUUUUCAAUUAUUUACUGAAAUUUGUAAUUUUAAUCGCGGUAAUUAAAACAGGAUUUGCUCUC
...........((.((((((((.(((....))-)..)))))))).))((((((((((.(((((((...((((((.....)))))).....)))))))))))))))))........ ( -21.20)
>DroSec_CAF1 24429 112 - 1
UUCUUUCCUUAGCCUUCAAUAUAUUUGUA--C-UUUUUAUUGAGUGCGUUCUGUUUUCAAUUAUUUACUGAAAUUUGUAAUUUUAAUCGCGGUAAUUAAAACAGGAUUUGCUCUC
..........(((.............(((--(-((......))))))((((((((((.(((((((...((((((.....)))))).....)))))))))))))))))..)))... ( -19.70)
>DroSim_CAF1 26531 112 - 1
UUCUUUCCUUAGCCUUCAAUAUAUUUGUA--C-UUUUUAUUGAGUGCGUUCUGUUUUCAAUUAUUUACUGAAAUUUGUAAUUUUAAUCGCGGUAAUUAAAACAGGAUUUGCUCUC
..........(((.............(((--(-((......))))))((((((((((.(((((((...((((((.....)))))).....)))))))))))))))))..)))... ( -19.70)
>DroEre_CAF1 25103 97 - 1
--------------UUCAAUAA----AUACAUUUUUUUAAUGAGUGCGUUCUGCUUUCAAUUAGUUACUUAAAUUUGUAAUUUUAAUUGCGGUAAUUAAAACAGGAUUUGCUCUC
--------------........----...............(((((.((((((.(((....((((((((.......(((((....)))))))))))))))))))))).))))).. ( -15.11)
>consensus
UUCUUUCCUUAGCCUUCAAUAAAUUUGUA__C_UUUUUAUUGAGUGCGUUCUGUUUUCAAUUAUUUACUGAAAUUUGUAAUUUUAAUCGCGGUAAUUAAAACAGGAUUUGCUCUC
.........................................(((((.((((((((((.((((((((((........))))...........)))))))))))))))).))))).. (-14.38 = -15.12 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:07 2006