Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,375,852 – 14,375,971 |
Length | 119 |
Max. P | 0.536123 |
Location | 14,375,852 – 14,375,971 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.01 |
Mean single sequence MFE | -23.88 |
Consensus MFE | -16.35 |
Energy contribution | -18.04 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.11 |
Mean z-score | -1.59 |
Structure conservation index | 0.68 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536123 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14375852 119 - 22407834 UUCUUGCUGACAGAUUUAUGUUUAUUUGCAAGAGAAUAGUUGUUUGUUGAUAUUUUUUGUGUUCACAUA-ACAACUGGUUGGCAUACGCACAAAAUGUACUUAAAUCUCAAAUUACAACA (((((((.((((......)))).....)))))))....(((((...(((((((.((((((((.....((-((.....))))......)))))))).)))........))))...))))). ( -26.30) >DroSec_CAF1 24009 119 - 1 UUCUUGCUGACAGAUUUAUGUUUAUUUGCAAAAGAAUAGUUGUUCGUUGAUAUUUUUUGUGCUCACAUA-ACAACUGGUUGGCAUACGCACAAAAUGUACUUAAAUCUCAAAUUACAACA (((((..((.(((((........))))))).)))))..(((((...(((((((.((((((((.....((-((.....))))......)))))))).)))........))))...))))). ( -24.40) >DroSim_CAF1 26111 119 - 1 UUCUUGCUGACAGAUUUAUGUUUAUUUGCAAAAGAAUAGUUGUUCGUUGAUAUUUUUUGUGCUCACAUA-ACAACUGGUUGGCAUACGCACAAAAUGUACUUAAAUCUCAAAUUACAACA (((((..((.(((((........))))))).)))))..(((((...(((((((.((((((((.....((-((.....))))......)))))))).)))........))))...))))). ( -24.40) >DroYak_CAF1 25619 102 - 1 UUCUUGCUGACAGAUUUAUGUUCAUUUGCAAAGGAAUAGUUGUUUGUUGAUAUUUUUUGUGUUCAUAUAAACAACUGGUUGUCAUACGCACAA------------------AUUGCAUCA .......((((((.....(((......)))......(((((((((((.(((((.....)))))...))))))))))).))))))...(((...------------------..))).... ( -20.40) >consensus UUCUUGCUGACAGAUUUAUGUUUAUUUGCAAAAGAAUAGUUGUUCGUUGAUAUUUUUUGUGCUCACAUA_ACAACUGGUUGGCAUACGCACAAAAUGUACUUAAAUCUCAAAUUACAACA (((((..((.(((((........))))))).)))))..(((((...(((((((.((((((((.........(((....)))......)))))))).)))........))))...))))). (-16.35 = -18.04 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:06 2006