Locus 4993

Sequence ID 2L_DroMel_CAF1
Location 14,375,209 – 14,375,318
Length 109
Max. P 0.900875
window7931

overview

Window 1

Location 14,375,209 – 14,375,318
Length 109
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.06
Mean single sequence MFE -20.00
Consensus MFE -15.81
Energy contribution -15.38
Covariance contribution -0.44
Combinations/Pair 1.14
Mean z-score -2.03
Structure conservation index 0.79
SVM decision value 1.02
SVM RNA-class probability 0.900875
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14375209 109 + 22407834
UGCAAAGUAGGUAACAAAUAAUGCAUAUGCUAAUACACGUGAUACCCUGGAUAACUAACUAGAUCUUACCUGCUUUGCAAACAAAAA-AAAAUCGAAAAUAACU----------AAGAUU
((((((((((((((.........((..((......))..)).....((((........))))...))))))))))))))........-................----------...... ( -23.80)
>DroSec_CAF1 23352 120 + 1
UGCAAAGUAGGUAACAAAUAAUGCAUAUGCUAAUACACAUGAUACCCUGGAUAACUAAACAGAUCUUAACUGCUUUGCAAACAAAAAGAAAGUCGAAAAUAACUUUAGAUACUUUAGAUU
((((((((((............((....))................(((..........))).......)))))))))).........(((((........))))).............. ( -18.20)
>DroSim_CAF1 25454 120 + 1
UGCAAAGUAGGUAACAAAUAAUGCAUAUGCUAAUACACAUGAUACCCUGGAUAACUAAACAGAUCUUAACUGCUUUGCAAACAAAAAGAAAGUCGAAAAUAACUUUAGAUACUUUAGAUU
((((((((((............((....))................(((..........))).......)))))))))).........(((((........))))).............. ( -18.20)
>DroEre_CAF1 24117 104 + 1
UGCAAAGUGGGUAACAA----UGCAUAUGCUAAUACACAUGAUACCCUUGUUAACUAA-CAGAUCUUAGCCGCUUUGCAAACAAAA----AUUCGAAAAUAACUCAAAUU-------AUG
(((((((((((((...(----((..(((....)))..)))..)))))(((((....))-))).........)))))))).......----....................-------... ( -19.80)
>consensus
UGCAAAGUAGGUAACAAAUAAUGCAUAUGCUAAUACACAUGAUACCCUGGAUAACUAAACAGAUCUUAACUGCUUUGCAAACAAAAA_AAAGUCGAAAAUAACUUUAGAU____UAGAUU
((((((((((.(((.........(((.((......)).))).....(((..........)))...))).))))))))))......................................... (-15.81 = -15.38 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:02 2006