Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,375,054 – 14,375,169 |
Length | 115 |
Max. P | 0.999307 |
Location | 14,375,054 – 14,375,169 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.50 |
Mean single sequence MFE | -32.16 |
Consensus MFE | -28.40 |
Energy contribution | -29.40 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.46 |
Structure conservation index | 0.88 |
SVM decision value | 3.50 |
SVM RNA-class probability | 0.999307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14375054 115 + 22407834 UGCUUAUCUGC----UCAGAGAGCGAAA-UAAAAAAUCUUGAAAACAAGUUAAAUGCAUGCAUAAAUCAAUCAAUCGCAGCAUUUGACAGACAGUCUCGAGUGGCGAGGCAAUCGAGGGU .((((.(((..----..)))))))....-.......((((((......(((((((((.(((...............)))))))))))).....((((((.....))))))..)))))).. ( -32.36) >DroSec_CAF1 23197 115 + 1 UGCUUAUCUGC----UCUGAGAGCGAAA-UAAAAAAUCUCGAAAACAAGUUAAAUGCAUGCAUAAAUCAAUCAAUCGCAGCAUUUGACAGACAGUCUCGAGUGGCGAGGCGGUCGAGGGU .((((.((...----...))))))....-.......((((........(((((((((.(((...............)))))))))))).(((.((((((.....)))))).))))))).. ( -34.16) >DroSim_CAF1 25299 115 + 1 UGCUUAUCUGC----UCUGAGAGCGAAA-UAAAAAAUCUCGAAAACAAGUUAAAUGCAUGCAUAAAUCAAUCAAUCGCAGCAUUUGACAGACAGUCUCGAGUGGCGAGGCGGUCGAGGGU .((((.((...----...))))))....-.......((((........(((((((((.(((...............)))))))))))).(((.((((((.....)))))).))))))).. ( -34.16) >DroEre_CAF1 23965 116 + 1 UGCUUAUCUGU----UCAGAGAGCGAAAUGAAAAAAUCAGAAAAACAAGUUAAAUGCAUGCAUAAAUCAAUCAAUCGCAGCAUUUGACAGACAGUCUCGAGUGGCGAGGCAUUCGAGGGU .((((.(((..----..)))))))........................(((((((((.(((...............))))))))))))......(((((((((......))))))))).. ( -29.96) >DroYak_CAF1 24772 119 + 1 UGCUUAUCUGUCUGCUCAGAGAGCGAAA-AAAAAAAUCAGAAAAACAAGUUAAAUGCAUGCAUAAAUCAAUCAAUCCCAGCAUUUGACAGACAGUCUCGAGUGGCGAGGCAGUCGAGGGU .......((((((((((...))))....-...................(((((((((......................)))))))))))))))((((((.((......)).)))))).. ( -30.15) >consensus UGCUUAUCUGC____UCAGAGAGCGAAA_UAAAAAAUCUCGAAAACAAGUUAAAUGCAUGCAUAAAUCAAUCAAUCGCAGCAUUUGACAGACAGUCUCGAGUGGCGAGGCAGUCGAGGGU .((((.((((......))))))))............((..........(((((((((.(((...............)))))))))))).(((.((((((.....)))))).))))).... (-28.40 = -29.40 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:01 2006