Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,373,900 – 14,374,014 |
Length | 114 |
Max. P | 0.857847 |
Location | 14,373,900 – 14,374,014 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.30 |
Mean single sequence MFE | -29.14 |
Consensus MFE | -17.86 |
Energy contribution | -19.36 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.59 |
Structure conservation index | 0.61 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.857847 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14373900 114 + 22407834 GAGCAGACAACCACUUAGCCUCAAUUGGCCAGCUAUCGAUGUAAAGUUAUUUGCAUGGCGACUUCAAUCCC-----GAUGGCUAACACCCAACCACC-CAAAUGGCUAUAUGCUAAUUAU .((((.....(((....(((......))).(((((((.(((((((....)))))))((.((......))))-----)))))))..............-....))).....))))...... ( -27.70) >DroSec_CAF1 22024 109 + 1 -----GACAACCACUUAGCCUCAAUUGGCCAGCUAUCGAUGUAAAGUUAUUUGCAUGGCGACUUCAGGCCC-----GAUGGCUAUCACCCAACCACC-CAAAUGGCUAUAUGCUAAUUAU -----............(((......))).(((((((((((((((....)))))))(((........))))-----)))))))..............-....((((.....))))..... ( -27.70) >DroSim_CAF1 24125 110 + 1 -----GACAACCACUUAGCCUCAAUUGGCCAGCUAUCGAUGUAAAGUUAUUUGCAUGGCGACUUCAGGCCC-----GAUGGCUAUCACCCAACCACCCCAAAUGGCUAUAUGCUAAUUAU -----............(((......))).(((((((((((((((....)))))))(((........))))-----)))))))...................((((.....))))..... ( -27.70) >DroEre_CAF1 22801 97 + 1 GUAUAGACAGCCACUUAGCCCCAAUUGGCCAGCUAUCGAUGUAAAGUUAUUUGCAUU----------------------GGCUAACACCCCACCACC-CAAAUGGCUAUAUGCUAAUUAU (((((...(((((....(((......))).(((...(((((((((....))))))))----------------------))))..............-....))))).)))))....... ( -23.30) >DroYak_CAF1 23582 119 + 1 GAAUAGACAGCCACUUAGCCUCAAUUGGCCAGCUACCGAUGUAAAGUUAUUUGCAUUGCGAUUUCAAGCUGGCUAAGAUGGCUAACACCCAGCCACC-CAAAUGGCAAUAUGCUAAUUAU ........(((...((((((....((((((((((..(((((((((....))))))))).(....).))))))))))...))))))......((((..-....)))).....)))...... ( -39.30) >consensus G___AGACAACCACUUAGCCUCAAUUGGCCAGCUAUCGAUGUAAAGUUAUUUGCAUGGCGACUUCAAGCCC_____GAUGGCUAACACCCAACCACC_CAAAUGGCUAUAUGCUAAUUAU .................(((......))).(((((((.(((((((....)))))))(((........)))......)))))))...................((((.....))))..... (-17.86 = -19.36 + 1.50)
Location | 14,373,900 – 14,374,014 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.30 |
Mean single sequence MFE | -34.47 |
Consensus MFE | -24.50 |
Energy contribution | -24.34 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.12 |
Mean z-score | -1.98 |
Structure conservation index | 0.71 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.787752 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14373900 114 - 22407834 AUAAUUAGCAUAUAGCCAUUUG-GGUGGUUGGGUGUUAGCCAUC-----GGGAUUGAAGUCGCCAUGCAAAUAACUUUACAUCGAUAGCUGGCCAAUUGAGGCUAAGUGGUUGUCUGCUC ......((((.(((((((((((-(.(.(((((...(((((.(((-----((...((((((.............))))))..))))).))))))))))...).)))))))))))).)))). ( -36.22) >DroSec_CAF1 22024 109 - 1 AUAAUUAGCAUAUAGCCAUUUG-GGUGGUUGGGUGAUAGCCAUC-----GGGCCUGAAGUCGCCAUGCAAAUAACUUUACAUCGAUAGCUGGCCAAUUGAGGCUAAGUGGUUGUC----- .......((...(((((((...-.))))))).))(((((((((.-----.(((((.((...((((.((...................))))))...)).)))))..)))))))))----- ( -36.51) >DroSim_CAF1 24125 110 - 1 AUAAUUAGCAUAUAGCCAUUUGGGGUGGUUGGGUGAUAGCCAUC-----GGGCCUGAAGUCGCCAUGCAAAUAACUUUACAUCGAUAGCUGGCCAAUUGAGGCUAAGUGGUUGUC----- .......((...(((((((.....))))))).))(((((((((.-----.(((((.((...((((.((...................))))))...)).)))))..)))))))))----- ( -36.51) >DroEre_CAF1 22801 97 - 1 AUAAUUAGCAUAUAGCCAUUUG-GGUGGUGGGGUGUUAGCC----------------------AAUGCAAAUAACUUUACAUCGAUAGCUGGCCAAUUGGGGCUAAGUGGCUGUCUAUAC .....((((((...(((((...-.)))))...))))))((.----------------------...))...............(((((((((((......))))....)))))))..... ( -26.10) >DroYak_CAF1 23582 119 - 1 AUAAUUAGCAUAUUGCCAUUUG-GGUGGCUGGGUGUUAGCCAUCUUAGCCAGCUUGAAAUCGCAAUGCAAAUAACUUUACAUCGGUAGCUGGCCAAUUGAGGCUAAGUGGCUGUCUAUUC .....((((((...(((((...-.)))))...))))))((((.(((((((.(((((......))).))...............(((.....)))......)))))))))))......... ( -37.00) >consensus AUAAUUAGCAUAUAGCCAUUUG_GGUGGUUGGGUGUUAGCCAUC_____GGGCCUGAAGUCGCCAUGCAAAUAACUUUACAUCGAUAGCUGGCCAAUUGAGGCUAAGUGGUUGUCU___C .......((((.(((((((.....)))))))(((....))).......................))))...............(((((((((((......))))....)))))))..... (-24.50 = -24.34 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:58 2006