Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,490,867 – 1,491,018 |
Length | 151 |
Max. P | 0.817715 |
Location | 1,490,867 – 1,490,957 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 81.30 |
Mean single sequence MFE | -17.44 |
Consensus MFE | -11.31 |
Energy contribution | -12.20 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.15 |
Mean z-score | -1.46 |
Structure conservation index | 0.65 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1490867 90 + 22407834 GAAUCGAACAGAGGGAA--------AACAAAAAAUAUAUCGCAACUGUGCGAUAAACAUAUGAAAAAUGCACAUGCGGU--GAGCCAAGUUCAAUUCCAG ((((.((((....((..--------.((........(((((((....))))))).............(((....)))))--...))..)))).))))... ( -19.40) >DroGri_CAF1 145876 80 + 1 GCA----A-------AU--------AAUGGCAAAUAUAUUG-AACACUGCGAUAAACAUAUGAAAAAUGCACAUGCGACUGGCGCCAAGUUCAAUUCCGC ((.----.-------..--------....))......((((-(((...(((.......((((.........)))).......)))...)))))))..... ( -10.54) >DroSim_CAF1 111157 90 + 1 AAAUCGAACAGAGGGAA--------AACGGAAAAUAUAUCGCAACUGUGCGAUAAACAUAUGAAAAAUGCACAUGCGGU--GAGCCAAGUUCAAUUCCAG .................--------...((((....(((((((....)))))))......((((....((....))((.--...))...)))).)))).. ( -17.70) >DroEre_CAF1 114764 90 + 1 GAAUCGAACUGAGGAAA--------AGCGGAAAAUGUAUCGCAACUGUGCGAUAAACAUAUGAAAAAUGCACAUGCGGU--GAGCCAAGUUCAAUUCCAG ((((.(((((..((...--------.((.....((((((((((....))))))..))))........(((....)))))--...)).))))).))))... ( -21.40) >DroYak_CAF1 111731 98 + 1 GAAUCGAACAGAGGGAAAAACGGCAAGCGGAAAAUAUAUCGCAACUGUGCGAUAAACAUAUGAAAAAUGCACAUGCGGU--GAGCCAAGUUCAAUUCCAG ((((.((((....((....((.(((.(((....((((((((((....)))))))....)))......)))...))).))--...))..)))).))))... ( -22.80) >DroAna_CAF1 111288 83 + 1 GAA----AGAAAGUAAA-----------AUAAAAUACAACGCAACUGUGCGAUAAACAUAUGAAAAAUGCACAUGCGGU--GAGCCAAGUUCAAUUCCAG ...----.(((......-----------...........((((..((((((.....(....).....)))))))))).(--((((...))))).)))... ( -12.80) >consensus GAAUCGAACAGAGGGAA________AACGGAAAAUAUAUCGCAACUGUGCGAUAAACAUAUGAAAAAUGCACAUGCGGU__GAGCCAAGUUCAAUUCCAG ............((((....................(((((((....)))))))......((((....((....))(((....)))...)))).)))).. (-11.31 = -12.20 + 0.89)
Location | 1,490,867 – 1,490,957 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 81.30 |
Mean single sequence MFE | -20.84 |
Consensus MFE | -12.83 |
Energy contribution | -14.75 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.12 |
Mean z-score | -2.36 |
Structure conservation index | 0.62 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1490867 90 - 22407834 CUGGAAUUGAACUUGGCUC--ACCGCAUGUGCAUUUUUCAUAUGUUUAUCGCACAGUUGCGAUAUAUUUUUUGUU--------UUCCCUCUGUUCGAUUC ...(((((((((..((...--...(((((((.......))))))).(((((((....)))))))...........--------...))...))))))))) ( -23.40) >DroGri_CAF1 145876 80 - 1 GCGGAAUUGAACUUGGCGCCAGUCGCAUGUGCAUUUUUCAUAUGUUUAUCGCAGUGUU-CAAUAUAUUUGCCAUU--------AU-------U----UGC ((((((((((((...(((......(((((((.......)))))))....)))...)))-))))...)))))....--------..-------.----... ( -19.00) >DroSim_CAF1 111157 90 - 1 CUGGAAUUGAACUUGGCUC--ACCGCAUGUGCAUUUUUCAUAUGUUUAUCGCACAGUUGCGAUAUAUUUUCCGUU--------UUCCCUCUGUUCGAUUU ...(((((((((..((...--...(((((((.......))))))).(((((((....)))))))...........--------...))...))))))))) ( -22.20) >DroEre_CAF1 114764 90 - 1 CUGGAAUUGAACUUGGCUC--ACCGCAUGUGCAUUUUUCAUAUGUUUAUCGCACAGUUGCGAUACAUUUUCCGCU--------UUUCCUCAGUUCGAUUC ...((((((((((.((...--...(((((((.......))))))).(((((((....)))))))...........--------...))..)))))))))) ( -23.60) >DroYak_CAF1 111731 98 - 1 CUGGAAUUGAACUUGGCUC--ACCGCAUGUGCAUUUUUCAUAUGUUUAUCGCACAGUUGCGAUAUAUUUUCCGCUUGCCGUUUUUCCCUCUGUUCGAUUC ...(((((((((.((((..--...(((((((.......))))))).(((((((....)))))))............))))...........))))))))) ( -24.60) >DroAna_CAF1 111288 83 - 1 CUGGAAUUGAACUUGGCUC--ACCGCAUGUGCAUUUUUCAUAUGUUUAUCGCACAGUUGCGUUGUAUUUUAU-----------UUUACUUUCU----UUC ..((((.((((.......(--(.(((((((((..................)))))..)))).))........-----------)))).)))).----... ( -12.23) >consensus CUGGAAUUGAACUUGGCUC__ACCGCAUGUGCAUUUUUCAUAUGUUUAUCGCACAGUUGCGAUAUAUUUUCCGUU________UUCCCUCUGUUCGAUUC ...(((((((((..((......))(((((((.......))))))).(((((((....)))))))...........................))))))))) (-12.83 = -14.75 + 1.92)
Location | 1,490,896 – 1,490,995 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 81.17 |
Mean single sequence MFE | -28.70 |
Consensus MFE | -18.96 |
Energy contribution | -19.94 |
Covariance contribution | 0.97 |
Combinations/Pair | 1.08 |
Mean z-score | -1.63 |
Structure conservation index | 0.66 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1490896 99 - 22407834 UGCGUCAAGUUCCAUUAAGUGGCGUAAACU--UUUGGCCUCUGGAAUUGAACUUGGC--UC---ACCGCAUGUGCAUUUUUCAUAUGUUUAUCGCACA--------GUUG----CGAU ((.(((((((((.(((.((.(((.......--....))).))..))).)))))))))--.)---)..(((((((.......)))))))..((((((..--------..))----)))) ( -30.20) >DroVir_CAF1 167574 101 - 1 UGCGUCAAGUUCUAUUAAGUGGCGUAAACU--UUUGGCCUGCGGAAUCGAGCUUGGC--GCCCAGCCGCAUGUGCAUUUUUCAUAUGUUUAUCGCAGU--------GUU-----CAAU .(((((((((((.(((..(((((.......--....))).))..))).)))))))))--))...((.(((((((.......))))))).....))...--------...-----.... ( -29.30) >DroPse_CAF1 151325 109 - 1 UGCGUCAAGUUCUAUUAAGUGGCGUAAACU--UUUGGCCUCUGGAAUUGAACUUGGCUCUC---ACCGCAUGUGCAUUUUUCAUAUGUUUAUCGCACAUAGCGCGGGUCC----CGAU ...(((((((((.(((.((.(((.......--....))).))..))).)))))))))....---.((((((((((..................))))))...))))....----.... ( -31.67) >DroSec_CAF1 108658 88 - 1 UGCGUCAAGUUC-AUUA-GU-GCGUAAACU--UUG---CUCUGCA--UGAGCU-AGC--UC---A-CGCAUGUGCAUUUUUCAUAUGUUUAUCGCACA--------G-UG----CGAU .((....(((((-((((-(.-(((......--.))---).))).)--))))))-.))--..---.-(((((((((..................)))))--------.-))----)).. ( -24.37) >DroWil_CAF1 161267 105 - 1 UGCGUCAAGUUCUAUUAAGUGGCGUAAAGUUUUUUGGCCUUCGGAAUUGAACUUGGG--CC---GCAGCAUGUGCAUUUUUCAUAUGUUUAUCGUAGA--------GUUUCGUUCGAU ((((((((((((.(((..(.(((.((((....)))))))..)..))).)))))))).--.)---)))(((((((.......)))))))..((((..(.--------....)...)))) ( -25.00) >DroPer_CAF1 149470 109 - 1 UGCGUCAAGUUCUAUUAAGUGGCGUAAACU--UUUGGCCUCUGGAAUUGAACUUGGCUCUC---ACCGCAUGUGCAUUUUUCAUAUGUUUAUCGCACAUAGCGCGGGUCU----CGAU ...(((((((((.(((.((.(((.......--....))).))..))).)))))))))....---.((((((((((..................))))))...))))....----.... ( -31.67) >consensus UGCGUCAAGUUCUAUUAAGUGGCGUAAACU__UUUGGCCUCUGGAAUUGAACUUGGC__UC___ACCGCAUGUGCAUUUUUCAUAUGUUUAUCGCACA________GUUG____CGAU ((((((((((((.(((....(((.............))).....))).)))))))))..........(((((((.......))))))).....)))...................... (-18.96 = -19.94 + 0.97)
Location | 1,490,922 – 1,491,018 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 82.78 |
Mean single sequence MFE | -30.60 |
Consensus MFE | -20.22 |
Energy contribution | -20.25 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.04 |
Mean z-score | -1.66 |
Structure conservation index | 0.66 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.510160 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1490922 96 - 22407834 -----AGGA---GCCAUGU-----UGUAAUUGAAUUUGCGUCAAGUUCCAUUAAGUGGCGUAAACU--UUUGGCCUCUGGAAUUGAACUUGGCUC---ACCGCAUGUGCAUUUU -----....---(((((((-----.((((......))))(((((((((.(((.((.(((.......--....))).))..))).)))))))))..---...))))).))..... ( -28.90) >DroVir_CAF1 167599 101 - 1 -----UGGGGC-GCCACGU-----UGUAAUUGAAUUUGCGUCAAGUUCUAUUAAGUGGCGUAAACU--UUUGGCCUGCGGAAUCGAGCUUGGCGCCCAGCCGCAUGUGCAUUUU -----((((((-(((((..-----..((((.(((((((...))))))).)))).))))))).....--....(((.((........))..))).))))...((....))..... ( -34.20) >DroGri_CAF1 145919 98 - 1 -----GGGGG---CAACGU-----UGUAAUUGAAUUUGCGUCAAGUUCUAUUAAGUGGCGUAAACU--UUUGGCCUGCGGAAUUGAACUUGGCGC-CAGUCGCAUGUGCAUUUU -----....(---((.(((-----.(..((((.....(((((((((((.(((..(((((.......--....))).))..))).)))))))))))-))))..)))))))..... ( -31.40) >DroWil_CAF1 161297 99 - 1 -----UCUU--GCCAAUGU-----UGUAAUUGAAUUUGCGUCAAGUUCUAUUAAGUGGCGUAAAGUUUUUUGGCCUUCGGAAUUGAACUUGGGCC---GCAGCAUGUGCAUUUU -----...(--((..((((-----(((.......(((((((((..(......)..))))))))).......(((((..(........)..)))))---)))))))..))).... ( -29.50) >DroMoj_CAF1 174505 106 - 1 -----GGGGGC-GUGGCCUGUGUCUGUAAUUGAAUUUGCGUCAAGUUCUAUUAAGUGGCGUAAACU--UUUGGCCUGCGGAAUUGAACUUGGCGCCCAGCCGCAUGUGCAUUUU -----.(.(((-..(((........((((......))))(((((((((.(((..(((((.......--....))).))..))).))))))))))))..))).)........... ( -33.10) >DroAna_CAF1 111336 104 - 1 UGGUAAGAGGUCGAAAUGU-----UGUAAUUGAAUUUGCGUCAAGUUCUAUUAAGUGGCGUAAACU--UUUGGCCUCUGGAAUUGAACUUGGCUC---ACCGCAUGUGCAUUUU ........(((.((.....-----.((((......))))(((((((((.(((.((.(((.......--....))).))..))).)))))))))))---)))((....))..... ( -26.50) >consensus _____AGGGG__GCAACGU_____UGUAAUUGAAUUUGCGUCAAGUUCUAUUAAGUGGCGUAAACU__UUUGGCCUGCGGAAUUGAACUUGGCGC___GCCGCAUGUGCAUUUU .........................((((......))))(((((((((.(((....(((.((((....))))))).....))).)))))))))........((....))..... (-20.22 = -20.25 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:38 2006