Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,372,763 – 14,372,883 |
Length | 120 |
Max. P | 0.512060 |
Location | 14,372,763 – 14,372,883 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.06 |
Mean single sequence MFE | -20.76 |
Consensus MFE | -16.18 |
Energy contribution | -16.02 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.07 |
Mean z-score | -1.66 |
Structure conservation index | 0.78 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512060 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14372763 120 - 22407834 UUUCAUAUUAAUACAUUUCAAUUUGUCCACUAAGCAACUUUGACAAAAAGGCCGCCGCGCAAAUGUGUUUUGUUUAGCCAUAAAUUAUCACCAAAAUGCUUAAACUUAAACGCUGAAAUA ..............((((((((((((...........((((.....))))((....))))))))((((((.((((((.(((..............))).))))))..)))))))))))). ( -17.64) >DroSec_CAF1 20921 119 - 1 UUUCAUAUUAAUACAUUUCAAUUUGUCCG-AAAGCAACUUUGACAAAAAUGCCGACGCACAAAUGUGUUUUGUUUAGCCAUAAAUUAUCACCAAAAUGCUUAAACUUAAACGCUGAAAUG .............(((((((((((((.((-...(((..(((....))).)))...)).))))))((((((.((((((.(((..............))).))))))..))))))))))))) ( -20.94) >DroSim_CAF1 23018 119 - 1 UUUCAUAUUAAUACAUUUCAAUUUGUCCG-AAAGCAACUUUGACAAAAAUGCCGCCGCACAAAUGUGUUUUGUUUAGCCAUAAAUUAUCACCAAAAUGCUUAAACUUAAACGCUGAAAUG .............(((((((((((((.((-...(((..(((....))).)))...)).))))))((((((.((((((.(((..............))).))))))..))))))))))))) ( -20.94) >DroEre_CAF1 21720 119 - 1 UUUCAUAUUAAUACAUUUCAAUUUGUCCG-AAAACAACUUCGACAAAAAGGCCGCCGCCCAAAUGGGUUUUGUUUAGCCAUAAAUUAUCACCAAAAUGCUUAAACUUAAACGCUGAAGUA ..............(((((..((((((.(-((......)))))))))..(((....((((....))))...((((((.(((..............))).))))))......)))))))). ( -19.54) >DroYak_CAF1 22431 119 - 1 UUUCAUAUUAAUACAUUUCAAUUUGUCCG-AAAACAACUUGGACAAAAAGGCCGCCGCCCAAAUGUGUUUUGUUUAGCCAUAAAUUAUCACCAAAAUGCUUAAACUUAAACGCUGAAGUA ..............((((((.((((((((-(.......)))))))))..(((....))).....((((((.((((((.(((..............))).))))))..)))))))))))). ( -24.74) >consensus UUUCAUAUUAAUACAUUUCAAUUUGUCCG_AAAGCAACUUUGACAAAAAGGCCGCCGCACAAAUGUGUUUUGUUUAGCCAUAAAUUAUCACCAAAAUGCUUAAACUUAAACGCUGAAAUA ..............((((((.((((((..............))))))..(((....))).....((((((.((((((.(((..............))).))))))..)))))))))))). (-16.18 = -16.02 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:56 2006