Locus 4987

Sequence ID 2L_DroMel_CAF1
Location 14,371,914 – 14,372,025
Length 111
Max. P 0.891564
window7923

overview

Window 3

Location 14,371,914 – 14,372,025
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.76
Mean single sequence MFE -24.57
Consensus MFE -20.36
Energy contribution -20.48
Covariance contribution 0.12
Combinations/Pair 1.09
Mean z-score -1.68
Structure conservation index 0.83
SVM decision value 0.97
SVM RNA-class probability 0.891564
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14371914 111 - 22407834
CAAUGGCUAUCUCUGUGCAAUUAAUCUCUGACAAAAGCGGAACGUCAGGCAAAAAGCCA---------AGAAAGCGUCAUAAACGAAUGUCAUGAAAAUUGAUAUGCCAAAUAAACUAAG
...(((((((((((((....(((.....))).....)))))...((((((.....))).---------.((...(((.....)))....)).))).....)))).))))........... ( -19.70)
>DroSec_CAF1 20091 111 - 1
CAAUGGCUAUCUCUGUGCAAUUAAUCUCUGACAAAAGCGGAACGCCAGGCAAAAAGCCA---------AGAAAGCGUCAUAAGCGAAUGUCAUGCAAAUUGAUAUGCCAAAUAAACUAAG
...((((((((....((((.........(((((...((.((.(((..(((.....))).---------.....)))))....))...)))))))))....)))).))))........... ( -27.50)
>DroSim_CAF1 22179 111 - 1
CAAUGGCUAUCUCUGUGCAAUUAAUCUCUGACAAAAGCGGAACGCCAGGCAAAAAGCCA---------AGAAAGCGUCAUAAGCGAAUGUCAUGCAAAUUGAUAUGCCAAAUAAACUAAG
...((((((((....((((.........(((((...((.((.(((..(((.....))).---------.....)))))....))...)))))))))....)))).))))........... ( -27.50)
>DroEre_CAF1 20887 120 - 1
CAACGGGUAUCUCUGUGCAAUUAAUCACUGACAAAAGCGGAACGGUGGGCAAAAAGCCAAGAAAGCCAAGAAAGCGUCAUAAGCGAAUGUCAUGCAAAUUGAUAUGCCGAAUAAACUAAG
...((((((((....((((.........(((((...((((.......(((.....))).......))..((.....))....))...)))))))))....))))).)))........... ( -25.94)
>DroYak_CAF1 21592 111 - 1
CAAUGGCUAUCUCUGCGCAAUUAAUCUCUGACAAAAGCGGAACGGGAGGCAAAAAGCCA---------AGAAAGCGUCAUAAGCGAAUGUCAUGCAAAUUGAUAUGCCAAAUAAACUAAG
...((((((((..(((((......(((((..(......)..).))))(((.....))).---------.....))(.(((......))).)..)))....)))).))))........... ( -22.20)
>consensus
CAAUGGCUAUCUCUGUGCAAUUAAUCUCUGACAAAAGCGGAACGCCAGGCAAAAAGCCA_________AGAAAGCGUCAUAAGCGAAUGUCAUGCAAAUUGAUAUGCCAAAUAAACUAAG
...((((((((....((((.........(((((..............(((.....)))................(((.....)))..)))))))))....)))).))))........... (-20.36 = -20.48 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:54 2006