Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,371,781 – 14,371,887 |
Length | 106 |
Max. P | 0.977372 |
Location | 14,371,781 – 14,371,887 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.52 |
Mean single sequence MFE | -29.98 |
Consensus MFE | -22.22 |
Energy contribution | -23.38 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.04 |
Mean z-score | -2.80 |
Structure conservation index | 0.74 |
SVM decision value | 1.79 |
SVM RNA-class probability | 0.977372 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14371781 106 - 22407834 GCCAGCGGCGUUUUGAGCCAAUGAUUAAAAAGGCCAACACGCA----CGCC------ACAAACUAGAUCCGACUGCGAUUGCAUUCGUAACUUGGCUAUCUCUAUCUCCACUAUCU---- (((((((((((.(((.(((............)))))).)))).----))).------............(((.(((....))).))).....))))....................---- ( -27.50) >DroSec_CAF1 19968 104 - 1 --CAACGGCGUUUUGAGCCAAUGAUUAAAAAGGCCAACACGCA----CGCC------ACAAACUAGAUCCGACUGCGAUUGCAGUCGUAACUUGGCUAUCUCUAUCUCCACUAUCU---- --.....((((.(((.(((............)))))).)))).----.(((------(......((...(((((((....)))))))...))))))....................---- ( -27.10) >DroSim_CAF1 22056 104 - 1 --CAACGGCGUUUUGAGCCAAUGAUUAAAAAGGCCAACACGCA----CGCC------ACAAACUAGAUCCGACUGCGAUUGCAGUCGUAACUUGGCUAUCUCUAUCUCCACUAUCU---- --.....((((.(((.(((............)))))).)))).----.(((------(......((...(((((((....)))))))...))))))....................---- ( -27.10) >DroEre_CAF1 20756 105 - 1 GCCAGCGGCGUUUUGAGCCAAUGAUUAAAAAGGCCAAAACGCACGCACGCCACAGCAACAAACUAGAUCCGACUGCGAUUCCAAUCGCAACUUGGCUAUCUCUAU--------------- (((((((((((((((.(((............))))))))))).)))..((....)).................((((((....))))))...)))).........--------------- ( -33.80) >DroYak_CAF1 21448 109 - 1 GCCAGCGGCGUUUUGAGCCAAUGAUUAAAAAGGCCAACACGCA----CGCC------ACAAACUAGAUCCGACUGCGAACGCAGUCGUAACUUGGCUAUCUCUAUCUC-UCUAUCUCCUC (((((((((((.(((.(((............)))))).)))).----))).------............(((((((....))))))).....))))............-........... ( -34.40) >consensus GCCAGCGGCGUUUUGAGCCAAUGAUUAAAAAGGCCAACACGCA____CGCC______ACAAACUAGAUCCGACUGCGAUUGCAGUCGUAACUUGGCUAUCUCUAUCUCCACUAUCU____ (((((.(((((.(((.(((............)))))).))))...........................(((((((....)))))))...))))))........................ (-22.22 = -23.38 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:53 2006