Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,370,502 – 14,370,622 |
Length | 120 |
Max. P | 0.996079 |
Location | 14,370,502 – 14,370,622 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.67 |
Mean single sequence MFE | -31.64 |
Consensus MFE | -30.76 |
Energy contribution | -30.76 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.21 |
Structure conservation index | 0.97 |
SVM decision value | 2.65 |
SVM RNA-class probability | 0.996079 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14370502 120 + 22407834 CAAUUUAUCACGCAAAUGCGUUUUUCAAUUUUAACAUGCCGCCAGGCAUCAUAAAAACGUUACAAACCCACAAUAUGAGCCAAGAGCCACGAGCAGUAGAAAAGCGGCAUGGGGGUAAGC ...((((((((((....)))).............((((((((..(((.(((((.....((.....))......))))))))....((.....)).........))))))))..)))))). ( -30.80) >DroSec_CAF1 18688 120 + 1 CAAUUUAUCACGCAAAUGCGUUUUUCAAUUUUAACAUGCCGCCAGGCAUCAUAAAAACGUUACAAACCCACAAUAUGAGCCAAGAGCCACGAGCAGUAGAAAAGCGGCAUGGGGGUAAGC ...((((((((((....)))).............((((((((..(((.(((((.....((.....))......))))))))....((.....)).........))))))))..)))))). ( -30.80) >DroSim_CAF1 20787 120 + 1 CAAUUUAUCACGCAAAUGCGUUUUUCAAUUUUAACAUGCCGCCAGGCAUCAUAAAAACGUUACAAACCCACAAUAUGAGCCAAGAGCCACGAGCAGUAGAAAAGCGGCAUGGGGGUAAGC ...((((((((((....)))).............((((((((..(((.(((((.....((.....))......))))))))....((.....)).........))))))))..)))))). ( -30.80) >DroEre_CAF1 19672 120 + 1 CAAUUUAUCACGCAAAUGCGUUUUUCAAUUUUAACAUGCCGCCAGGCAUCAUAAAAACGUUACAAACCCACAAUAUGAGCCAAGAGCCACGAGCAGUAGAAAAGCGGCAUGGGGGUAAGC ...((((((((((....)))).............((((((((..(((.(((((.....((.....))......))))))))....((.....)).........))))))))..)))))). ( -30.80) >DroYak_CAF1 20129 120 + 1 CAAUUUAUCACGCAAAUGCGUUUUUCAAUUUUAACAUGCCGCCAGGCAUCAUAAAAACGUUACAAACCCACAAUAUGAGCCAAGAGCCACGAGCAGUAGAAAGGCGGCAUGGGGGUAAGC ...((((((((((....)))).............(((((((((.(((.(((((.....((.....))......))))))))....((.....))........)))))))))..)))))). ( -35.00) >consensus CAAUUUAUCACGCAAAUGCGUUUUUCAAUUUUAACAUGCCGCCAGGCAUCAUAAAAACGUUACAAACCCACAAUAUGAGCCAAGAGCCACGAGCAGUAGAAAAGCGGCAUGGGGGUAAGC ...((((((((((....)))).............((((((((..(((.(((((.....((.....))......))))))))....((.....)).........))))))))..)))))). (-30.76 = -30.76 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:52 2006