Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,367,172 – 14,367,292 |
Length | 120 |
Max. P | 0.922012 |
Location | 14,367,172 – 14,367,292 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.20 |
Mean single sequence MFE | -34.78 |
Consensus MFE | -32.46 |
Energy contribution | -32.90 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -1.66 |
Structure conservation index | 0.93 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.922012 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14367172 120 + 22407834 UUGAUAUCUUCUUGGCUCUGUGGCGCGCUUUUGGUAAUUGCACUUCGUCCGCUGCUUCUGUGUUACCAGCCUUGUGAGCCACAGUCAUGGCUAAGAAAAUAGGCCCACUGAUGUGUAUGC ....(((.((((((((((((((((.(((..((((((((.((((.......).)))......))))))))....))).)))))))....))))))))).)))....(((....)))..... ( -37.10) >DroSec_CAF1 15142 120 + 1 UUGAUAUCUUCUUGGCUCUGUGGCGCGCUUUUGGUAAUUGCACUUCGUCCGCUGCUUCUGUGUUACCAGCCUCGUGAGCCACAGUCAUGGCUAAGAAAAUAGGCCCUGAAUAGUUUAUAC ........((((((((((((((((.(((..((((((((.((((.......).)))......))))))))....))).)))))))....))))))))).((((((........)))))).. ( -35.80) >DroSim_CAF1 17253 120 + 1 UUGAUAUCUUCUUGGCUCUGUGGCGCGCUUUUGGUAAUUGCACUUCGUCCGCUGCUUCUGUGUUACCAGCCUCGUGAGCCACAGUCAGGGCCAAGAAAAUGGGCCCUGAAUAGUUUAUAC .............(((((((((((.(((..((((((((.((((.......).)))......))))))))....))).)))))))((((((((.........))))))))..))))..... ( -38.90) >DroEre_CAF1 16157 115 + 1 UUGAUAUCUUCUUGGCUCUGUGGCGCGCUUUUGGUAAUUGCACUUCAUCCGCUGCUUCUGUGUUACCAGCAUUGUGAGCCACAGUCAUGGCCAAGCAUAUAAUAUCAAAA-AAUCU---- (((((((...((((((((((((((.(((..((((((((.((((.......).)))......))))))))....))).)))))))....)))))))......)))))))..-.....---- ( -37.80) >DroYak_CAF1 15371 115 + 1 UUGAUAUCUUCUUGGCUCUGUGGCGCGCUUUUGGUAAUUGCACUUCGUCCGCUGCUUCUGUGUUACCAGCCUUGUGAAGUACACUCAUGGCCAAGCAAAUAAAAUCAAAA-AAUCU---- (((((.....(((((((..(((.((((...((((((((.((((.......).)))......))))))))...)))).....)))....)))))))........)))))..-.....---- ( -24.32) >consensus UUGAUAUCUUCUUGGCUCUGUGGCGCGCUUUUGGUAAUUGCACUUCGUCCGCUGCUUCUGUGUUACCAGCCUUGUGAGCCACAGUCAUGGCCAAGAAAAUAGGCCCAAAA_AGUCUAU_C ....(((.((((((((((((((((.(((..((((((((.((((.......).)))......))))))))....))).)))))))....))))))))).)))................... (-32.46 = -32.90 + 0.44)
Location | 14,367,172 – 14,367,292 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.20 |
Mean single sequence MFE | -33.62 |
Consensus MFE | -28.46 |
Energy contribution | -30.10 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.04 |
Mean z-score | -1.80 |
Structure conservation index | 0.85 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893698 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14367172 120 - 22407834 GCAUACACAUCAGUGGGCCUAUUUUCUUAGCCAUGACUGUGGCUCACAAGGCUGGUAACACAGAAGCAGCGGACGAAGUGCAAUUACCAAAAGCGCGCCACAGAGCCAAGAAGAUAUCAA ((...(((....))).)).(((((((((.((.....(((((((.......((((.(........).)))).......((((...........))))))))))).)).))))))))).... ( -34.40) >DroSec_CAF1 15142 120 - 1 GUAUAAACUAUUCAGGGCCUAUUUUCUUAGCCAUGACUGUGGCUCACGAGGCUGGUAACACAGAAGCAGCGGACGAAGUGCAAUUACCAAAAGCGCGCCACAGAGCCAAGAAGAUAUCAA ...................(((((((((.((.....(((((((((.((..(((.(.....)...)))..))))....((((...........))))))))))).)).))))))))).... ( -31.00) >DroSim_CAF1 17253 120 - 1 GUAUAAACUAUUCAGGGCCCAUUUUCUUGGCCCUGACUGUGGCUCACGAGGCUGGUAACACAGAAGCAGCGGACGAAGUGCAAUUACCAAAAGCGCGCCACAGAGCCAAGAAGAUAUCAA ...........((((((((.........))))))))(((((((((.((..(((.(.....)...)))..))))....((((...........)))))))))))................. ( -38.00) >DroEre_CAF1 16157 115 - 1 ----AGAUU-UUUUGAUAUUAUAUGCUUGGCCAUGACUGUGGCUCACAAUGCUGGUAACACAGAAGCAGCGGAUGAAGUGCAAUUACCAAAAGCGCGCCACAGAGCCAAGAAGAUAUCAA ----.....-..((((((((.....((((((.....((((((((((...(((((.(........).)))))..))).((((...........))))))))))).))))))..)))))))) ( -37.80) >DroYak_CAF1 15371 115 - 1 ----AGAUU-UUUUGAUUUUAUUUGCUUGGCCAUGAGUGUACUUCACAAGGCUGGUAACACAGAAGCAGCGGACGAAGUGCAAUUACCAAAAGCGCGCCACAGAGCCAAGAAGAUAUCAA ----.....-..((((...(((((.((((((..((.(((.....)))...((((.(........).))))((.....((((...........)))).)).))..)))))).))))))))) ( -26.90) >consensus G_AUAAACU_UUCUGGGCCUAUUUUCUUGGCCAUGACUGUGGCUCACAAGGCUGGUAACACAGAAGCAGCGGACGAAGUGCAAUUACCAAAAGCGCGCCACAGAGCCAAGAAGAUAUCAA ...................((((((((((((.....(((((((.......((((.(........).)))).......((((...........))))))))))).)))))))))))).... (-28.46 = -30.10 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:38 2006