Locus 4980

Sequence ID 2L_DroMel_CAF1
Location 14,366,573 – 14,366,693
Length 120
Max. P 0.790499
window7902

overview

Window 2

Location 14,366,573 – 14,366,693
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -36.80
Consensus MFE -35.10
Energy contribution -35.14
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.34
Structure conservation index 0.95
SVM decision value 0.59
SVM RNA-class probability 0.790499
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14366573 120 - 22407834
CGCUCCGGCUUAGCUUGUUGGCCAAGUUACGAGGUUUCACCUUGUUGUUGCUCCUGCUGCCGCCGUUGUUGGCCGCAUGUUAGUGCUUCCUUUUUGGCAUCGGCAACAUGUCAAUUAUAU
......(((.(((((((.....)))))))(((((.....))))).(((((((...(.((((((((....)))).((((....)))).........)))).)))))))).)))........ ( -35.30)
>DroSec_CAF1 14526 120 - 1
CGCUCCGGCUUAGCUUGUUGGCCAAGUUACGAGGUUUCACCUUGUUGUUGCUCCUGCUGCCGCCGUUGUUGGCCGCAUGUUAGUGCUUCCUUUUUGGCAUCGGCAACAUGUCAAUUAUAU
......(((.(((((((.....)))))))(((((.....))))).(((((((...(.((((((((....)))).((((....)))).........)))).)))))))).)))........ ( -35.30)
>DroSim_CAF1 16651 120 - 1
CGCUCCGGCUUAGCUUGUUGGCCAAGUUACGAGGUUUCACCUUGUUGUUGCUCCUGCUGCCGCCGUUGUUGGCCGCAUGUUAGUGCUUCCUUUUUGGCAUCGGCAACAUGUCAAUUAUAU
......(((.(((((((.....)))))))(((((.....))))).(((((((...(.((((((((....)))).((((....)))).........)))).)))))))).)))........ ( -35.30)
>DroEre_CAF1 15503 120 - 1
CGCAGCGGCUUAGCUUGUUGGCCACGUUACGAGGUUUCACCUUGUUGUUGCUCCUGCUGCCGCCGUUGUUGGCCGCAUGUUAGUGCUUCCUUUUUGGCAUCGGCAACAUGUCAAUUAUAU
.((((((((.((((.....(((.(((..((((((.....))))))))).)))...))))..)))))))).((..((((....))))..))...(((((((.(....))))))))...... ( -41.20)
>DroYak_CAF1 14674 120 - 1
CGCUCCGGCUUAGCUUGUUGGCCAAGUUACGAGGUUUCACCUUGUUGCUGCUCCUGCUGCCGCUGUUGUUGGCCGCAUGUUAGUGCUUCCUUUUUGGCAUCGGCAACAUGUCAAUUAUAU
......((((((((.(((.((((((...((((((.....)))))).((.((.......)).)).....))))))))).))))).)))......(((((((.(....))))))))...... ( -36.90)
>consensus
CGCUCCGGCUUAGCUUGUUGGCCAAGUUACGAGGUUUCACCUUGUUGUUGCUCCUGCUGCCGCCGUUGUUGGCCGCAUGUUAGUGCUUCCUUUUUGGCAUCGGCAACAUGUCAAUUAUAU
......((((((((.(((.((((((...((((((.....)))))).((.((....)).))........))))))))).))))).)))......(((((((.(....))))))))...... (-35.10 = -35.14 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:34 2006