Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,489,851 – 1,489,947 |
Length | 96 |
Max. P | 0.647939 |
Location | 1,489,851 – 1,489,947 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 91.35 |
Mean single sequence MFE | -26.89 |
Consensus MFE | -19.08 |
Energy contribution | -21.68 |
Covariance contribution | 2.60 |
Combinations/Pair | 1.10 |
Mean z-score | -2.27 |
Structure conservation index | 0.71 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647939 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1489851 96 + 22407834 GAGGUGGGGCUUUGGCGGUGAGCAAAUCACCAGCCAAGUCUUUAACCCAGCUUCAUUUAAUAUGUUGACAAGUUAAUAAAUUGUUUUGCAUGAACA ((((((((..(((((((((((.....))))).)))))).......)))).))))......(((((.(((((.........)))))..))))).... ( -29.60) >DroSec_CAF1 107600 96 + 1 GGAGUGGGGCUUUGGCGGUGAGCAAAUCACCAGCCAAGUCUUUAACCCAGCUUCAUUUAAUAUGUUGACAAGUUGAUAAAUUGUUUUGCAUGAACA ((((((((..(((((((((((.....))))).)))))).......)))).))))......(((((.(((((.........)))))..))))).... ( -29.40) >DroSim_CAF1 110122 96 + 1 GGAGUGGGGCUUUGGCGGUGAGCAAAUCACCAGCCAAGUCUUUAACCCAGCUUCAUUUAAUAUGUUGACAAGUUGAUAAAUUGUUUUGCAUGAACA ((((((((..(((((((((((.....))))).)))))).......)))).))))......(((((.(((((.........)))))..))))).... ( -29.40) >DroEre_CAF1 113434 95 + 1 GG-GUGGGGCUUCGGCGGUGAGCAAAUCACCAGCCAAGUCUUUAACCCAGCUUCAUUUAAUAUGUUGACAAGUUGAUAAAUUGUUUUGCAUAAACA ((-((.((((((.((((((((.....))))).)))))))))...))))............(((((.(((((.........)))))..))))).... ( -31.80) >DroYak_CAF1 110649 81 + 1 GG-GUGG--------------GCAAAUCACCAGGCAAGUCUUUAACCCAGCUUCAUUUAAUAUGUUGACAAGUUGAUAAAUUGUUUUGCAUGAACA .(-((((--------------.....)))))..(((((.........((((((((..........)))..))))).........)))))....... ( -14.27) >consensus GG_GUGGGGCUUUGGCGGUGAGCAAAUCACCAGCCAAGUCUUUAACCCAGCUUCAUUUAAUAUGUUGACAAGUUGAUAAAUUGUUUUGCAUGAACA ((((((((..(((((((((((.....))))).)))))).......)))).))))......(((((.(((((.........)))))..))))).... (-19.08 = -21.68 + 2.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:34 2006