Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,349,138 – 14,349,231 |
Length | 93 |
Max. P | 0.701386 |
Location | 14,349,138 – 14,349,231 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 80.01 |
Mean single sequence MFE | -22.12 |
Consensus MFE | -11.69 |
Energy contribution | -11.55 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.38 |
Mean z-score | -2.19 |
Structure conservation index | 0.53 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701386 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14349138 93 - 22407834 --UGCUUGUGAUAGAUGUUUUCAUGAUUUGUUCAAAAUCCUACAAGUCUUUGUUUAGCGUUAAUGUUCCGAUUAGCUUUGGAGCGUAGUAUUUUU --((((.......((((((..((.(((((((..........)))))))..))...)))))).(((((((((......)))))))))))))..... ( -21.50) >DroPse_CAF1 15550 92 - 1 AGUAUUUGUGAUAGAU-AUUUCAUGAUUUGUUUGGAAAUCUAUAAUG--GAGUUCACCGUUAAUGUUCCAAAUCAAUUUGGAACCAAGUAUUUUU ((((((((...(((((-.(((((.........))))))))))(((((--(......))))))..((((((((....))))))))))))))))... ( -21.50) >DroSec_CAF1 14594 93 - 1 --UGCUUGUGAUAGAGGUUUUCAUGAUUUGUCCAAAAUCCUACAAGUCUUUGUUUAGCGUUAAUGUUCCGAUUAGCUUUGGAGCGUAGUAUUUUU --.(((...(((((((..((....(((((.....)))))....))..))))))).)))....(((((((((......)))))))))......... ( -23.80) >DroSim_CAF1 14596 93 - 1 --UGCUUGUGAUAGAGGUUUUCAUGAUUUGUCCAAAAUCCUACAAGUCUUUGUUUAGCGUUAAUGUUCCGAUUAGCUUUGGAGCGUAGUAUUUUU --.(((...(((((((..((....(((((.....)))))....))..))))))).)))....(((((((((......)))))))))......... ( -23.80) >DroYak_CAF1 16300 94 - 1 AGUGCUUGUGAUAGA-GUUUUCAUGAUUUGUCCAAAAUCCAGCAGGUCUAUGUCUAGCGUUAUUGCUCCUAUUAGAUUUGGAGCGUAGUAUUUUU ((((((...(((((.-(((..((((((((((..........))))))).)))...))).)))))(((((..........)))))..))))))... ( -20.60) >DroPer_CAF1 17712 92 - 1 AGUAUUUGUGAUAGAU-AUUUCAUGAUUUGUUUGGAAAUCUAUAAUG--GAGUUCACCGUUAAUGUUCCAAAUCAAUUUGGAACCAAGUAUUUUU ((((((((...(((((-.(((((.........))))))))))(((((--(......))))))..((((((((....))))))))))))))))... ( -21.50) >consensus __UGCUUGUGAUAGAUGUUUUCAUGAUUUGUCCAAAAUCCUACAAGUCUUUGUUUAGCGUUAAUGUUCCGAUUAGAUUUGGAGCGUAGUAUUUUU ...(((((((...((.....))..(((((.....))))).))))))).................(((((((......)))))))........... (-11.69 = -11.55 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:24 2006