Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,343,122 – 14,343,242 |
Length | 120 |
Max. P | 0.526329 |
Location | 14,343,122 – 14,343,242 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.67 |
Mean single sequence MFE | -41.40 |
Consensus MFE | -26.29 |
Energy contribution | -26.74 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.45 |
Mean z-score | -1.45 |
Structure conservation index | 0.64 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526329 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14343122 120 + 22407834 CAAGAAACAGGAUGCGGAGGGCGGAGCCGAGUCGCAGCUAAUCAGCGAGGGCAACGCCAAGGGAGUCUCCAUCAGGCAGAAGAUCUCUGAGAUGCCCUGCAGUUAUAAUCUGGCAUGUAG .......((((.(((((..(((...)))...)))))........((.((((((.(....(((((.(((((....)).)))...)))))..).))))))))........))))........ ( -36.30) >DroVir_CAF1 12233 120 + 1 CAAAAAACAGGAUGCGGAUGGCAAUGCCGAGUCGCAGCUAAUCAGCGAGGGCAAUGCCAAGGGCGUGGCCAUUAGGCAGAAUAUUGCAGAUAUGCCCUGCAGCUAUAAUCUGGCCUGUCG ......(((((...(((((((((.((((...((((.........)))).)))).)))).(((((((((((....))).(.......)...)))))))).........))))).))))).. ( -42.40) >DroGri_CAF1 16085 120 + 1 CAAGAAACAGGAUGGAGAGGGCAAUGCCGAGUCGCAGCUCAUUAGCGAGGGCAAUGCCAAGGGCGUGGCUAUUAGGCAGACAAUUGGCGACAUGCCCUGCAGUUACAAUCUCGCCUGUCG ......(((((...((((.((((.((((...((((.........)))).)))).)))).((((((((((((...(.....)...))))..))))))))..........)))).))))).. ( -44.40) >DroWil_CAF1 17126 120 + 1 UAAGAAACAGGAUGCCGAGGGUGGUGCUGAAUCGCAGUUAAUUAACGAAGGACAUGCCAAAGGUGUGGCCAUAAGGCAAAAGAUAGCCGAUAUGCCAUGUAGCUACAAUUUGGCAUGUCG (((..(((.((...))....(((((.....))))).)))..)))......(((((((((((..((((((.(((.((((...(.....)....)))).))).)))))).))))))))))). ( -38.90) >DroMoj_CAF1 13286 120 + 1 CAAGAAGCAGGAUGCAGAGGGCAAUCCCGAAGCGCAGCUCAUCGCCGAGGGCAAUGCCAAGGGCGUGGCCAUUAGGCAAACAAUUGCCGAUAUGCCCUGCAGCUAUAAUCUCGCCUGUCG ......(((((.((.((((((....)))..(((((((.....((((...(((...)))...)))).(((.....(((((....))))).....))))))).)))....)))))))))).. ( -41.20) >DroAna_CAF1 9579 120 + 1 UAAGAAGCAGGACGCCGAGGGCGGAGCCGAGUCCCAGUUGAUCAGCGAGGGUAAUGCCAAGGGCGUGGCCAUUCGGCAGAAGAUAGCCGAGAUGCCGUGCAGCUACAAUUUGGCCUGCCG ......((((..((((...))))..(((((((...(((((....(((..(((.(((((...))))).))).((((((........))))))....))).)))))...))))))))))).. ( -45.20) >consensus CAAGAAACAGGAUGCAGAGGGCAAUGCCGAGUCGCAGCUAAUCAGCGAGGGCAAUGCCAAGGGCGUGGCCAUUAGGCAGAAGAUUGCCGAUAUGCCCUGCAGCUACAAUCUGGCCUGUCG ......(((((...((((.((((..(((...((((.........)))).)))..)))).(((((((((((....))).............))))))))..........)))).))))).. (-26.29 = -26.74 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:23 2006