Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,330,532 – 14,330,632 |
Length | 100 |
Max. P | 0.981648 |
Location | 14,330,532 – 14,330,632 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 87.30 |
Mean single sequence MFE | -24.32 |
Consensus MFE | -18.30 |
Energy contribution | -19.30 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.11 |
Mean z-score | -2.82 |
Structure conservation index | 0.75 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981648 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14330532 100 + 22407834 AGAAGAAGGAAAAAGAGAGGAAGGAGCAAGAGGAAUCGAGGACUGCCAGCCGAAAGGUGUCUGUAGCUCAAGAUGGUCUAUUGUCCAGUAGAACCUUUAG ....(((((..............((((.(.(((......((....)).(((....))).))).).)))).......((((((....)))))).))))).. ( -24.20) >DroSec_CAF1 2050 100 + 1 AGAAGAGGGAAAAGGAAAAGAAGGAGCAAGAGGAAUCGAGGGCUGCCAGCCGAAAGGUAUCGGUAGCUCAAGAUGGUCUAUUGUCCAGUAGAACAGUUAG ......................(((.(((.(((.(((..((((((((.(((....)))...))))))))..)))..))).)))))).............. ( -30.10) >DroSim_CAF1 2053 100 + 1 AGAAGAGGGAAAAGGAAAAGAAGGAGCAAGAGGAAUCGAGGGCUGCCAGCCGAAAGGUAUCGGUAGCUCAAGAUGGUCUAUUGUCCAGUAGAACAGUUAG ......................(((.(((.(((.(((..((((((((.(((....)))...))))))))..)))..))).)))))).............. ( -30.10) >DroEre_CAF1 2057 100 + 1 AGAAAAGGGAAAAAGAAAGGAAGGAACAGGAGGAAAUGAGGGCUGCCAGCCGAAAGGUGUCUGUAGCUCAAGAAGGUGUAUUGUCAAGUAGGAUCGCGAG ......(.((.............................(((((((..(((....)))....))))))).......(.((((....)))).).)).)... ( -19.30) >DroYak_CAF1 2059 100 + 1 AGAAAAGGGAAAAAGAAAGAAAGGAUCAGGAGGAAUCGAAGGCUGCGAGCCGAAAGGUAUCAGUAGCUCAAGAAGGUGUAUUGUCAAGUAGAAUCGCGAG ...................................(((..(((((((((((....))).)).))))))......(((.((((....))))..))).))). ( -17.90) >consensus AGAAGAGGGAAAAAGAAAGGAAGGAGCAAGAGGAAUCGAGGGCUGCCAGCCGAAAGGUAUCGGUAGCUCAAGAUGGUCUAUUGUCCAGUAGAACCGUUAG ......................(((.(((.....(((..(((((((..(((....)))....)))))))..)))......)))))).............. (-18.30 = -19.30 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:21 2006