| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,326,398 – 14,326,513 |
| Length | 115 |
| Max. P | 0.518571 |
| Location | 14,326,398 – 14,326,513 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 76.83 |
| Mean single sequence MFE | -32.30 |
| Consensus MFE | -23.14 |
| Energy contribution | -22.75 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518571 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14326398 115 + 22407834 GAUAGUCCUGGUCAUAAUCUGGUUG-CU-CUCUUGCAGAUCGGCAGCUAUUCCUACGAGCCGAAUGCAUUCAAGUUUGGAGACGAUAUCUAUAGCUAUUCGCAGCUGAAGCUACCGG .......(((((.....((.(((((-(.-....((((..(((((..............))))).))))....((((((((.......)))).))))....))))))))....))))) ( -27.64) >DroVir_CAF1 234833 115 + 1 UCUAGGGCUAGAAUUAAUGGAAUUC-AU-UUCUUACAGAUUGGCAGCUACUCCUACGAACCGAAUGCCUUCAAGUUUGGCGACGAGCUUUAUAGCUAUGCGCAGCUGAAGCUGCCGG ..(((((...(((((.....)))))-..-.))))).....((((((((.(..((.(((((.(((....)))..)))))(((...((((....))))...)))))..).)))))))). ( -31.20) >DroGri_CAF1 176907 115 + 1 GCCAGCGCUAAGAUUAAUCCAUAUA-CU-UUCUUACAGAUCGGCAGCUACUCCUACGAGCCAAAUGCUUUCAAAUUUGGCGAUGAGCUUUACAGCUACUCGCAGCUAAAGCUGCCGG ......(.(((((............-..-.))))))....((((((((....((.((((((((((........)))))))....((((....))))..))).))....)))))))). ( -32.16) >DroMoj_CAF1 259303 117 + 1 UCAAAAGCUUCGAUUAAUCCAUUUCCAUUUGCUUACAGAUCGGAAGCUACUCCUACGAACCGAAUGCCUUCAAGUUCGGCGACGAGCUCUAUAGCUACUCGCAGCUGAAGCUGCCCG .....((((((............((((((((....))))).)))((((.......(((((.(((....)))..)))))((((..((((....))))..))))))))))))))..... ( -32.50) >DroAna_CAF1 162901 115 + 1 CCCAGACCCGGACUUACGCGUCUCU-CU-UCCUUGCAGAUCGGCAGCUAUUCCUACGAACCGAACGCCUUCAAGUUCGGAGAUGACAUCUAUAGCUACUCCCAGCUGAAGUUGCCGG ...((((.((......)).))))..-..-...........((((((((...........((((((........))))))............(((((......))))).)))))))). ( -32.70) >DroPer_CAF1 200087 115 + 1 GUAGGUCCCGGGACUAAUUCGGGCU-CU-UUCUUGCAGAUCGGCAGCUACUCCUACGAGCCGAAUGCGUUCAAGUUCGGAGACGAGAUUUACAGCUAUUCGCAGCUGAAGCUGCCCG (((((.((((((.....))))))..-..-..))))).....(((((((....((.((..((((((........))))))...)))).....(((((......))))).))))))).. ( -37.60) >consensus GCAAGACCUGGGAUUAAUCCAGUUC_CU_UUCUUACAGAUCGGCAGCUACUCCUACGAACCGAAUGCCUUCAAGUUCGGAGACGAGAUCUAUAGCUACUCGCAGCUGAAGCUGCCGG .......................................(((((((((.......((..((((((........))))))...)).......(((((......))))).))))))))) (-23.14 = -22.75 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:20 2006