Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,305,867 – 14,305,962 |
Length | 95 |
Max. P | 0.759067 |
Location | 14,305,867 – 14,305,962 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 82.31 |
Mean single sequence MFE | -15.02 |
Consensus MFE | -10.46 |
Energy contribution | -10.99 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.11 |
Mean z-score | -2.10 |
Structure conservation index | 0.70 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759067 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14305867 95 - 22407834 AUUACCACAUUUUCCAAUUUACGGCGUGAAAAACGAAAUGG------------AAACUCGAUAAACAAUUCAAUUGCAAUUAUGCAAUAAAGAUUGAAAC-ACCAA--GG ....((....((((((.(((.((...(....).))))))))------------))).........(((((..((((((....))))))...)))))....-.....--)) ( -14.70) >DroSim_CAF1 130732 91 - 1 AUUAACACAUUUUCCAAUUUACGGGGUGAAAAACGAAAUGG------------AAACUCGAUAAACAAUUCAAUUGCAAUUAUGCAAUAAAGAUUGAAAC-ACC------ .............((.......))((((.....(((...(.------------...)))).....(((((..((((((....))))))...)))))...)-)))------ ( -15.00) >DroEre_CAF1 139958 87 - 1 AUUAACACAUUUUCCAAUUUACGGGGUGAAAUACGAAAUGG------------AAACUCGAUAAACAAUUCAAUUGCAAUUAUGCAAUAAAGAUUGGAA----------- ...........(((((((((...((((......(((...(.------------...)))).......)))).((((((....))))))..)))))))))----------- ( -16.12) >DroYak_CAF1 129530 87 - 1 AUUAACACAUUUUCCAAUUUACGGGGUGCAACACAAAAUGG------------AAACUCGAUAAACAAUUCAAUUGCAAUUAUGCAAUAAAGAUUGGAA----------- ...........(((((((((...((((....((.....)).------------..)))).............((((((....))))))..)))))))))----------- ( -15.90) >DroAna_CAF1 142799 87 - 1 AUUAACACAUUUUCCAAUUUACAGAGUGAAAAACGAAAUCG------------AAACUCGACAAACAAUUCAAUUACAAUUAUGCAAUAAAGAUUGGAA----------- ...........(((((((((...((((......((....))------------..))))((........))...................)))))))))----------- ( -10.80) >DroPer_CAF1 176662 110 - 1 AUUAACACAAUUUCCAAUCUACUGAAUAUGAAAAGAAAUCGAAAUCAAAAUCCAAACUCUACAAACAAUUCAAUUGCAAUUAUGCAAUAAAGAUUGGAAAAACCGAACCG ..........((((((((((..(((((......(((....((........)).....))).......)))))((((((....))))))..)))))))))).......... ( -17.62) >consensus AUUAACACAUUUUCCAAUUUACGGGGUGAAAAACGAAAUGG____________AAACUCGAUAAACAAUUCAAUUGCAAUUAUGCAAUAAAGAUUGGAA___________ ...........(((((((((...((((............................)))).............((((((....))))))..)))))))))........... (-10.46 = -10.99 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:14 2006