Locus 4968

Sequence ID 2L_DroMel_CAF1
Location 14,304,038 – 14,304,137
Length 99
Max. P 0.528914
window7880

overview

Window 0

Location 14,304,038 – 14,304,137
Length 99
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 75.48
Mean single sequence MFE -18.80
Consensus MFE -10.68
Energy contribution -11.18
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.57
SVM decision value -0.01
SVM RNA-class probability 0.528914
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14304038 99 + 22407834
UAGUCACAAAGGCCAACUCUCCCCUCCGAUCAUGCUGUGUGCGAUCUUAACAAUCAAGAUCAAUAUCAUGCAUUUACAAU----GUACAAAU--AU--UGCCUUCUC
........(((((..................(((((((((..((((((.......)))))).))).)).))))....(((----((....))--))--))))))... ( -15.20)
>DroPse_CAF1 168959 87 + 1
-------AAGAGCUGG-----CUCCCCGAGCAUGCUGUGUGCGAUCUUGACAAUCAAGAUCAAUAUCUUGCAGUUACAAU----GUACAAAU--AU--UGCCUUCUC
-------..(((..((-----(.......((((.....))))(((((((.....)))))))(((((..((((.......)----)))...))--))--))))..))) ( -22.70)
>DroGri_CAF1 149644 95 + 1
---------CGACGAA-CGUAGUCUGCGAUCAUGCUGUGUGCGAUCUUGACAAUCAAGAUCAAUAUCAUGCCAUUACAAUAUUUGUACAAGACGCU--UGCCUUUAC
---------.(((...-....))).(((.((..(((((((..(((((((.....))))))).))).)).))...((((.....))))...))))).--......... ( -19.50)
>DroWil_CAF1 203010 89 + 1
-GACGACAAAGACGA-----------UGAUCAUGCUGUGUGCGAUCUUGACAAUCAAGAUCAAUAUCAGGCAUUUACAAU----GUACAAAU--AUUUUGCCUUCUC
-............((-----------((.....((.....))(((((((.....)))))))..))))(((((.....(((----((....))--))).))))).... ( -18.90)
>DroAna_CAF1 141202 84 + 1
------------CCAACUC---CCCUCGAUCAUGCUGUGUGCGAUCUUAACAAUCAAGAUCAAUAUCAUGCAGUUACAAU----GUACCAAU--AU--UGCCUUCUC
------------.......---...........((((((((.((((((.......)))))).....))))))))..((((----((....))--))--))....... ( -13.80)
>DroPer_CAF1 174570 87 + 1
-------AAGAGCUGG-----CUCCCCGAGCAUGCUGUGUGCGAUCUUGACAAUCAAGAUCAAUAUCUUGCAGUUACAAU----GUACAAAU--AU--UGCCUUCUC
-------..(((..((-----(.......((((.....))))(((((((.....)))))))(((((..((((.......)----)))...))--))--))))..))) ( -22.70)
>consensus
_______AAAGGCCAA_____CUCCCCGAUCAUGCUGUGUGCGAUCUUGACAAUCAAGAUCAAUAUCAUGCAGUUACAAU____GUACAAAU__AU__UGCCUUCUC
................................(((.((((..(((((((.....))))))).))))...)))................................... (-10.68 = -11.18 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:13 2006